Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01950 1013 / 0 Leucine-rich repeat protein kinase family protein (.1) AT1G06840 992 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G37450 800 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G53590 682 / 0 Leucine-rich repeat protein kinase family protein (.1) AT1G79620 436 / 4e-137 Leucine-rich repeat protein kinase family protein (.1) AT5G49760 393 / 2e-121 Leucine-rich repeat protein kinase family protein (.1) AT5G49770 390 / 2e-120 Leucine-rich repeat protein kinase family protein (.1) AT5G49780 334 / 2e-100 Leucine-rich repeat protein kinase family protein (.1) AT1G53420 254 / 8e-71 Leucine-rich repeat transmembrane protein kinase (.1) AT1G61860 228 / 3e-66 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G111100 [exp] 1526 / 0 AT5G01950 1052 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.016G140200 [exp] 1228 / 0 AT5G01950 1018 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G159500 [exp] 1019 / 0 AT1G06840 1102 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G131800 [exp] 1014 / 0 AT1G06840 1092 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G159200 [exp] 1004 / 0 AT1G06840 1040 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.016G140101 [exp] 999 / 0 AT1G06840 1001 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G231700 [exp] 436 / 2e-137 AT5G49760 1031 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.016G144100 [exp] 432 / 1e-135 AT1G79620 1380 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G114400 [exp] 422 / 6e-132 AT1G79620 1295 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035605 [exp] 1165 / 0 AT5G01950 1126 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10003244 [exp] 1048 / 0 AT5G01950 1039 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10019114 [exp] 1029 / 0 AT1G06840 1288 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10034445 [exp] 1018 / 0 AT1G06840 1274 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10004061 [exp] 727 / 0 AT5G01950 766 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10002278 [exp] 634 / 0 AT5G37450 722 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10012159 [exp] 432 / 4e-135 AT5G49760 1058 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10007587 [exp] 355 / 2e-107 AT5G49760 956 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10021003 [exp] 273 / 9e-82 AT1G79620 549 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10023848 [exp] 255 / 6e-76 AT1G79620 431 / 5e-143 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.016G140300.4 pacid=42809590 polypeptide=Potri.016G140300.4.p locus=Potri.016G140300 ID=Potri.016G140300.4.v4.1 annot-version=v4.1 ATGGGGTTTGACTATCTTCCTTGTTTGGGCATGAAGATGTTGCAGCTCAGAACTTGGGGGTGTGTTTTTCTCCTGTCATATTGTTACTTGCTGCTCCTTA CAGTTGCTCAAGTTACAAATCCCTCAGAAGTCAATGCATTGCTAGCAGTCAAGAACAATTTGATTGATCCTATGAAGCAACTCAGTAATTGGAATAAGGG AGATCCATGTACATCCAATTGGACTGGTGTTTTTTGTTATGATGCAACTGGGACTGATGGATACTTGCATGTCCGAGAACTTCAGCTTCTTAATTTGAAT CTTTCTGGAAATTTAGCACCTGAGCTAGGCCAACTTTCTCAACTGGCAATATTGGATTTCATGTGGAATGAATTGACTGGCAGCATACCAAGAGAGATAG GAAATCTTTCATCTTTGAAACTCCTGCTGTTGAATGGAAACAAATTATCAGGATCGTTACCTGATGAGCTTGGCTATTTATCGAAATTAATTAGACTCCA AGTGGATCAGAACAATATTTCAGGACGAATACCAAAATCATTTGCTAACATGAGCAGTATTAGACATTTCCACTTGAACAACAACTCAATCAGTGGTCAA ATTCCACCCGAGCTTTCCAAACTATCAACTCTTGTTCACTTGCTTTTGGATAATAATAACTTATCTGGGTATCTTCCACCAGAATTATCAAAGTTCCCAG AGATGCGGATAATTCAACTTGACAACAACAACTTTAACGGATCTGGAATTCCAGCTACTTATGGCAGCCTTTCCAGATTAGTAAAATTAAGTCTCAGAAA TTGTAGCTTGCAAGGTTCTATACCTGATCTTAGCAGCATACCAAACCTATACTATTTGGATCTGAGCAAGAACAACCTTAGAGGATCTCTACCACCCAAA CTTTCTGATACTATGAGAACTATCGATTTGTCAGAGAACCATCTTAGTGGATCTATACCAGGAAGTTTCTCAGATCTTTCTTTTCTTCAAAGACTGTCAC TTGAAAATAATCAGTTGAATGGGTCTGTGCCAGCTAACATTTGGCAGAACATGACCTCCACTAAAAGTGCTTGTTTTACAATTGATCTCAGGAACAATTC ACTCTCAAGCATTTCGGGGGCGTTGAATCCGCCGGACAATGTCACCTTAAGGCTTCGAGGCAATCCTATTTGTGAAAATGCAAACATAGCCAACATAATC CAGTTCTGTGGATTTGAAGCTGGAGGAGATAGGACTACTGAGAGGTCAATGAATTCTACGATGACATGTCCTGTTCAAGCATGCCCAGTAGATAATTTCT TTGAATATGTCCCAGCTTCACCTCTACCATGCTTTTGTGCCTCCCCTCTTAGGATTGGATACAGACTTAAGAGCCCTAGTTTCTCTTATTTTGATCCATA TGCTTTTCCATTCGAGTTACATGTGACTAGTGCTCTTAAACTGAATCCATATCAATTGTCAATCGATTCCTATTTCTGGGAAGAAGGCCCTCGTTTAAGA ATGCATCTGAAGATATTTCCTCCAGCTAATAATGTGCACTCAAACACATTTAATGTATCCGAGGTTGGACGAATAAGAGGTGCATTTACATCGTGGCACT TTCCTGGTGATGACTTATTCGGACCATATGAACTTCTCAACTTCACTCTAGTGGGACCTTATGCAGCGATACATTTCGACACAAAAGGGAAGAATATTAG CATAGGAATTTGGGTAGCCGTTATATTAGGTGCTATTGCCTGTACCGTTGCAGTATCTGCAGTTGTCACACTTCTTATTGCTAGAAGATATGCTAGAAAG CATAGAAATTTGTCGAGAAGACATTCATCATCGAAGGCATCGATAAAAATCGATGGTGTGAAAGGCTTCACATTTAAAGAAATGGCCCTGGCTACTGATA ACTTTAACTGCTCAACTCAAGTTGGTAGAGGAGGCTATGGAAAGGTTTATAGAGGTGTTCTTTCTGGCAACTCAATTGTGGCCATAAAGCGTACTGAAGA AGGATCATTACAAGGCCAAAAAGAATTTCTGACTGAGATTAAATTGTTGTCAAGGTTGCATCACAGAAATCTAGTTTCACTGGTTGGATATTGTGAAGAA AAAGAGGAGCAGATGCTGGTGTACGAGTTCATGCCAAATGGTACCTTGCGGGACTGGCTTTCCGATAAGGCCAAGGGAACATTGAACTTTGGTACAAGGT TAAGCATCGCGCTGGGTTCAGCTAAGGGTATCCTTTACCTCCATACTGAAGCACAGCCTCCGGTATTCCACCGGGATATCAAGGCCACTAACATACTATT AGACTCTAAGCTCACTGCTAAAGTTGCTGACTTTGGACTCTCACGTCTCGCTCCTGTCTTGGATGATGAAGGGAATCTGCCTAATCATGTATCAACAGTA GTGAGGGGAACTCCAGGATACCTCGATCCAGAATACTTTTTGACCCATAAGTTGACAGACAAGAGTGATGTGTATAGCCTTGGGATTGTGTTTCTGGAGC TCCTGACTGGTATGCACCCCATATCACATGGCAAAAACATTGTTCGCGAGGTTAACATGGCTCATCAGTCTGGCATTATGTTCTCTATCATAGACAACAG AATGGGTGCTTATCCATCTGAATGTGTGGAGAGATTTGTGGCGTTGGCACTCAGCTGTTGCCATGACAAGCAAGAAAAGCGGCCGTCAATGCAGGATGTG GTCAGGGAACTGGAAACCATACTCAAAATGATGCCAGAAGCTGATGCCATCTATGCAGAATCCACTTCCACATATTCTGGCAAATCCACTCCCACATATT CCGGCAAGTCAGCATCATCATCTTCATTTTACTCGAGCCAATATCTATACGAAAGTTCCTGTCTTCTGGGAAGTGATCTTAGCAGTGGTGTTGTTCCCAC CATCAACCCTCGCTAA
AA sequence Show only first row Show all	>Potri.016G140300.4 pacid=42809590 polypeptide=Potri.016G140300.4.p locus=Potri.016G140300 ID=Potri.016G140300.4.v4.1 annot-version=v4.1 MGFDYLPCLGMKMLQLRTWGCVFLLSYCYLLLLTVAQVTNPSEVNALLAVKNNLIDPMKQLSNWNKGDPCTSNWTGVFCYDATGTDGYLHVRELQLLNLN LSGNLAPELGQLSQLAILDFMWNELTGSIPREIGNLSSLKLLLLNGNKLSGSLPDELGYLSKLIRLQVDQNNISGRIPKSFANMSSIRHFHLNNNSISGQ IPPELSKLSTLVHLLLDNNNLSGYLPPELSKFPEMRIIQLDNNNFNGSGIPATYGSLSRLVKLSLRNCSLQGSIPDLSSIPNLYYLDLSKNNLRGSLPPK LSDTMRTIDLSENHLSGSIPGSFSDLSFLQRLSLENNQLNGSVPANIWQNMTSTKSACFTIDLRNNSLSSISGALNPPDNVTLRLRGNPICENANIANII QFCGFEAGGDRTTERSMNSTMTCPVQACPVDNFFEYVPASPLPCFCASPLRIGYRLKSPSFSYFDPYAFPFELHVTSALKLNPYQLSIDSYFWEEGPRLR MHLKIFPPANNVHSNTFNVSEVGRIRGAFTSWHFPGDDLFGPYELLNFTLVGPYAAIHFDTKGKNISIGIWVAVILGAIACTVAVSAVVTLLIARRYARK HRNLSRRHSSSKASIKIDGVKGFTFKEMALATDNFNCSTQVGRGGYGKVYRGVLSGNSIVAIKRTEEGSLQGQKEFLTEIKLLSRLHHRNLVSLVGYCEE KEEQMLVYEFMPNGTLRDWLSDKAKGTLNFGTRLSIALGSAKGILYLHTEAQPPVFHRDIKATNILLDSKLTAKVADFGLSRLAPVLDDEGNLPNHVSTV VRGTPGYLDPEYFLTHKLTDKSDVYSLGIVFLELLTGMHPISHGKNIVREVNMAHQSGIMFSIIDNRMGAYPSECVERFVALALSCCHDKQEKRPSMQDV VRELETILKMMPEADAIYAESTSTYSGKSTPTYSGKSASSSSFYSSQYLYESSCLLGSDLSSGVVPTINPR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G01950			Leucine-rich repeat protein ki...		Potri.016G140300 [exp]	0	1
AT1G34300			lectin protein kinase family p...		Potri.016G102500 [exp]	2.23	0.8996
AT1G71695			Peroxidase superfamily protein...		Potri.005G195700 [exp]	2.23	0.8721
AT3G02850		SKOR	STELAR K+ outward rectifier, S...		Potri.004G083300 [exp]	4.79	0.8393	Pt-SKOR.3
AT1G22540			Major facilitator superfamily ...		Potri.013G106500 [exp]	8.06	0.8501
AT3G23160			Protein of unknown function (D...		Potri.008G164700 [exp]	10.00	0.8370
AT3G14840			Leucine-rich repeat transmembr...		Potri.001G385200 [exp]	12.00	0.8483
AT5G20400			2-oxoglutarate (2OG) and Fe(II...		Potri.018G121700 [exp]	12.96	0.8726
AT2G23620		ATMES1	ARABIDOPSIS THALIANA METHYL ES...		Potri.007G037700 [exp]	13.07	0.8759	HNL.2
AT2G37730			Protein of unknown function (D...		Potri.006G089150 [exp]	13.74	0.8423
AT1G74790			catalytics (.1)		Potri.015G067200 [exp]	14.07	0.8588

Compare expression of checked genes

Potri.016G140300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.