Plant FIBer expression Database

Potri.016G140500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G08650 334 / 5e-108 ZIP metal ion transporter family (.1.2)
AT3G20870 44 / 0.0002 ZTP29 zinc transporter 29, ZIP metal ion transporter family (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G111200
[exp]
428 / 2e-144 AT3G08650 679 / 0.0 ZIP metal ion transporter family (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10003243
[exp]
336 / 1e-108 AT3G08650 842 / 0.0 ZIP metal ion transporter family (.1.2)
Lus10035606
[exp]
308 / 1e-98 AT3G08650 822 / 0.0 ZIP metal ion transporter family (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0184 DMT PF02535 Zip ZIP Zinc transporter
Representative CDS sequence
>Potri.016G140500.3 pacid=42809205 polypeptide=Potri.016G140500.3.p locus=Potri.016G140500 ID=Potri.016G140500.3.v4.1 annot-version=v4.1
ATGCAAAGTACCATGAGGTTCATATTAAAACAAGCTCCCCTGTTTTTTCTGCTCTCTGTAGTTCTCTTTGCATGCATTTTGGCAGAATCTGATAGTGATA
ATTCTGAAAGGTTAAGGTCGGCTCCTCATAAAAATGTGAGAAGTAGTGTTATAGATGGAAGTGGTACAGAAAATGCAGTTGATTTTGAGGGTACAAGTGA
TGGGTTGGAGGAGAGAAAGGGTGGTTATAACAGAGTCTCGATATCTACAGTTGCATTATTTACGTTGGCCATGGCTGCTGCCACTGGTTTAGGTGCTGTC
CCGTTCTTTTTTGTGGAGCTAGATCCTCATTGGGAAGGATTGTGCGGTGGGACGGCTGCTGGTGTTATGCTGGCTGCTAGCTTTGACCTCATACGGGAAG
GGCAAGGCCATGGTGCTGGCAGTTGGGTTGTGATTGGGATTTTATCTGGTGGAATTTTCATTTTGCTGTGCAAGAAGTTTCTTGAACAATACGGGGAAGT
AAGCATGTTAGACATTACAGGTGCTGATGCAACTAAAGTTGTTCTTGTTATCGGAATCATGACTCTCCATTCATTTGGGGAGGGTTCTGGTGTTGGTGTC
TCTTTTGCTGGCTCAAAAGGCTTTTCTCAAGGGCTTTTGGTAACTTTGGCCATAGCTGTGCACAACATACCAGAGGGGCTAGCTGTGAGCATGATGCTTG
CATCGAAGGGTTTTTCCCCGCAAAATGCAATGTTGTGGAGTGTAATCACATCCTTGCCTCAGCCCATCGTAGCTGTTCCTGCATTCATGTGTGCTGATGC
ATTTAGCAAGTTCCTTCCTTTCTGCATGGGCTTTGCTGCTGGATGTATGATCTGGATGGTTGTTGCGGAAGTGCTTCCTGACGCTTTCAAGCTACTTGTG
TCTTCAAAGATGGGGTTTTTCCCCCTCATATCTTTGCTTGCACTGGGAGCAGCATTTGTCCATGTTTCAAGCTCCAGCATTTTGAAAATTGCAGGTCGCA
AAAAGGCATCAGTGAACAATTTACCAACAGTAACGGGCTTTCCGGTGAGTGTTCACACACTTCAGTCTTTCTTGTCCTGTGGAGCGGTTGCCTTTCATGC
ATTGGCTGAGGGGCTTGCATTAGGAGTGGCTGCACCAGAAGCTTATGGACTTGGTCGGCACATGGTCCTTCCTGTCTCGCTACATGGACTCCCTCGCGGT
GCAGCTGTTGCTAGCTGCATCTTCGGTGCTACTGATAGCTGGCATAGTGCCCTAGCAGCGGCAACTTTAATTGGGTTTGTGGGTCCAATATCTGCTATAG
GAGCAATACTTGCAAGAATTGACTACAGTGGTCTGGATCATGTGATGGTCTTCGCTTGTGGTGGATTGCTCCCTAGCTTTGGAAGCATAATTAGAAGAGG
AGTAAGGTTGGATACGCGGAGAGGGGGTTTCGGGTTGGCAGTTGGAGTGGGGTTTGCTAGTTTATGTTTAATGTGCACTAAGCTGGTTTGCTTGCACACT
CCTTATTGCAATTCTGCTCCTGAAGCTGTCAGATGA
AA sequence
>Potri.016G140500.3 pacid=42809205 polypeptide=Potri.016G140500.3.p locus=Potri.016G140500 ID=Potri.016G140500.3.v4.1 annot-version=v4.1
MQSTMRFILKQAPLFFLLSVVLFACILAESDSDNSERLRSAPHKNVRSSVIDGSGTENAVDFEGTSDGLEERKGGYNRVSISTVALFTLAMAAATGLGAV
PFFFVELDPHWEGLCGGTAAGVMLAASFDLIREGQGHGAGSWVVIGILSGGIFILLCKKFLEQYGEVSMLDITGADATKVVLVIGIMTLHSFGEGSGVGV
SFAGSKGFSQGLLVTLAIAVHNIPEGLAVSMMLASKGFSPQNAMLWSVITSLPQPIVAVPAFMCADAFSKFLPFCMGFAAGCMIWMVVAEVLPDAFKLLV
SSKMGFFPLISLLALGAAFVHVSSSSILKIAGRKKASVNNLPTVTGFPVSVHTLQSFLSCGAVAFHALAEGLALGVAAPEAYGLGRHMVLPVSLHGLPRG
AAVASCIFGATDSWHSALAAATLIGFVGPISAIGAILARIDYSGLDHVMVFACGGLLPSFGSIIRRGVRLDTRRGGFGLAVGVGFASLCLMCTKLVCLHT
PYCNSAPEAVR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G08650 ZIP metal ion transporter fami... Potri.016G140500
[exp]
0 1
AT1G48430 Dihydroxyacetone kinase (.1) Potri.015G032500
[exp]
10.58 0.5897
AT4G26190 Haloacid dehalogenase-like hyd... Potri.015G059000
[exp]
20.19 0.5841
AT3G56840 FAD-dependent oxidoreductase f... Potri.006G026100
[exp]
24.24 0.5194
AT1G32960 ATSBT3.3 Subtilase family protein (.1) Potri.001G450600
[exp]
24.37 0.6009
AT3G55480 AP-3beta, PAT2 beta-subunit of adaptor protei... Potri.010G202800
[exp]
29.29 0.5965
AT4G26590 ATOPT5 ARABIDOPSIS THALIANA OLIGOPEPT... Potri.006G003700
[exp]
42.26 0.5348
AT5G11850 Protein kinase superfamily pro... Potri.018G053800
[exp]
74.73 0.5602
AT2G02560 TIP120, HVE, ET... HEMIVENATA, CULLIN-ASSOCIATED ... Potri.004G229300
[exp]
97.69 0.5038 CAND1.3
AT5G04480 UDP-Glycosyltransferase superf... Potri.008G029400
[exp]
159.81 0.4889
AT4G26640 WRKY ATWRKY20, WRKY2... WRKY family transcription fact... Potri.011G087900
[exp]
176.94 0.4825 Pt-WRK.1

Potri.016G140500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.