Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38610 456 / 7e-164 RNA-binding KH domain-containing protein (.1.2) AT3G08620 445 / 2e-159 RNA-binding KH domain-containing protein (.1) AT5G56140 273 / 2e-91 RNA-binding KH domain-containing protein (.1) AT4G26480 273 / 2e-91 RNA-binding KH domain-containing protein (.1) AT1G09660 234 / 3e-76 RNA-binding KH domain-containing protein (.1.2) AT5G51300 101 / 6e-24 splicing factor-related (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G111400 [exp] 511 / 0 AT2G38610 467 / 4e-168 RNA-binding KH domain-containing protein (.1.2) Potri.013G159800 [exp] 392 / 1e-138 AT2G38610 408 / 7e-145 RNA-binding KH domain-containing protein (.1.2) Potri.019G132100 [exp] 391 / 3e-138 AT2G38610 381 / 3e-134 RNA-binding KH domain-containing protein (.1.2) Potri.003G005500 [exp] 278 / 9e-94 AT1G09660 335 / 8e-116 RNA-binding KH domain-containing protein (.1.2) Potri.004G225900 [exp] 278 / 1e-93 AT1G09660 334 / 2e-115 RNA-binding KH domain-containing protein (.1.2) Potri.011G168000 [exp] 268 / 2e-89 AT5G56140 427 / 8e-152 RNA-binding KH domain-containing protein (.1) Potri.001G471000 [exp] 267 / 4e-89 AT5G56140 425 / 9e-151 RNA-binding KH domain-containing protein (.1) Potri.001G126400 [exp] 105 / 3e-25 AT5G51300 790 / 0.0 splicing factor-related (.1.2.3) Potri.003G107200 [exp] 102 / 3e-24 AT5G51300 830 / 0.0 splicing factor-related (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035608 [exp] 498 / 1e-180 AT2G38610 494 / 6e-179 RNA-binding KH domain-containing protein (.1.2) Lus10003241 [exp] 493 / 2e-178 AT2G38610 488 / 1e-176 RNA-binding KH domain-containing protein (.1.2) Lus10021676 [exp] 310 / 5e-106 AT2G38610 314 / 1e-107 RNA-binding KH domain-containing protein (.1.2) Lus10035015 [exp] 309 / 1e-105 AT2G38610 315 / 5e-108 RNA-binding KH domain-containing protein (.1.2) Lus10034443 [exp] 307 / 2e-104 AT2G38610 327 / 3e-112 RNA-binding KH domain-containing protein (.1.2) Lus10037344 [exp] 267 / 3e-89 AT1G09660 400 / 1e-141 RNA-binding KH domain-containing protein (.1.2) Lus10035768 [exp] 265 / 3e-88 AT1G09660 399 / 7e-141 RNA-binding KH domain-containing protein (.1.2) Lus10019116 [exp] 255 / 8e-85 AT2G38610 275 / 7e-93 RNA-binding KH domain-containing protein (.1.2) Lus10038932 [exp] 104 / 5e-25 AT5G51300 897 / 0.0 splicing factor-related (.1.2.3) Lus10013751 [exp] 42 / 0.0005 AT3G32940 240 / 8e-70 RNA-binding KH domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0007 [poplar] [flax] KH PF00013 [poplar] [flax] KH_1 KH domain CL0007 [poplar] [flax] PF16544 [poplar] [flax] STAR_dimer Homodimerisation region of STAR domain protein
Representative CDS sequence Show only first row Show all	>Potri.016G140800.2 pacid=42809009 polypeptide=Potri.016G140800.2.p locus=Potri.016G140800 ID=Potri.016G140800.2.v4.1 annot-version=v4.1 ATGTCAGGCTTGTATAATCCCAGCTTTTCACCTGCAAGAGCTGCTTCTCCTCAGATTAGAAGCACCCCAGATGTTGACAGTCAGTACTTGTCAGAGTTAT TAGCAGAACATCAAAAGCTTGGACCTTTCATGCAAATTCTTCCAATATGTAGCCGCCTGTTAAATCAAGAAATTTTCCGGGTATCAGGAATGATGTCCAA CCAAGGATTTGGAGACTTTGACAGACTACGGCATAGAAGTCCCAGCCCAATGGCTTCTTCGAACCTTATCTCCAATGTTGGTGGGACGGGTTTAGGTGGC TGGAATGGTCTTCCTCAGGAGAGATTAAGTGGACCTCCTGGAATGACTATGGACTGGCAAGGTGCACCTGCAAGCCCTAGTTCATTTACCGTGAAGAGAA TTTTGCGTTTGGAAATTCCAGTAGATACTTATCCAAATTTCAATTTTGTTGGGCGACTTCTGGGCCCTAGAGGCAATTCACTGAAACGGGTAGAAGCTAC CACAGGTTGCCGGGTGTACATTAGAGGGAAAGGATCAATCAAGGATCCAGACAAGGAAGAGAAGCTAAAGGGTAGACCGGGCTATGAGCACTTGAATGAT CCACTTCACATCTTAATCGAGGCCGACTTACCTGCCAGCATTGTTGACATAAGACTCAGACAGGCACAAGAAATTATAGAAGAACTGCTCAAACCCGTGG ACGAGTCACAAGATTTTATTAAGAGGCAGCAGTTGCGCGAGCTAGCGATGCTAAATTCAAATTTCAGAGAAGAGAGTCCAGGGCCAAGTGGCAGTGTCTC TCCTTTCAATACAAGTGGAATGAAACGCGCGAAAACAGGACGCTGA
AA sequence Show only first row Show all	>Potri.016G140800.2 pacid=42809009 polypeptide=Potri.016G140800.2.p locus=Potri.016G140800 ID=Potri.016G140800.2.v4.1 annot-version=v4.1 MSGLYNPSFSPARAASPQIRSTPDVDSQYLSELLAEHQKLGPFMQILPICSRLLNQEIFRVSGMMSNQGFGDFDRLRHRSPSPMASSNLISNVGGTGLGG WNGLPQERLSGPPGMTMDWQGAPASPSSFTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEEKLKGRPGYEHLND PLHILIEADLPASIVDIRLRQAQEIIEELLKPVDESQDFIKRQQLRELAMLNSNFREESPGPSGSVSPFNTSGMKRAKTGR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G38610			RNA-binding KH domain-containi...		Potri.016G140800 [exp]	0	1
AT3G22320		RPB5A, NRPD5, N...	RNA POLYMERASE II FIFTH LARGES...		Potri.006G161600 [exp]	16.49	0.7202	Pt-ATRPABC24.1
AT1G80620			S15/NS1, RNA-binding protein (...		Potri.003G178800 [exp]	34.72	0.7017
AT2G20810		GAUT10, LGT4	galacturonosyltransferase 10 (...		Potri.019G108900 [exp]	41.35	0.6468
AT3G18600			P-loop containing nucleoside t...		Potri.009G045300 [exp]	45.95	0.6866
AT1G71530			Protein kinase superfamily pro...		Potri.013G100100 [exp]	73.17	0.6996
AT1G75335			unknown protein		Potri.019G095600 [exp]	79.97	0.6906
AT4G15800		RALFL33	ralf-like 33 (.1)		Potri.005G025800 [exp]	91.65	0.6577	RALFL23.2
AT1G76940			RNA-binding (RRM/RBD/RNP motif...		Potri.002G070200 [exp]	109.12	0.6361	RBP1.2
AT1G22270			Trm112p-like protein (.1)		Potri.005G165000 [exp]	133.49	0.6683
AT5G59970			Histone superfamily protein (....		Potri.007G012500 [exp]	140.91	0.6685

Compare expression of checked genes

Potri.016G140800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.