Plant FIBer expression Database

Potri.016G140900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G08610 91 / 3e-26 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10009864
[exp]
97 / 1e-28 AT3G08610 119 / 1e-37 unknown protein
Lus10010288
[exp]
95 / 1e-27 AT3G08610 119 / 2e-37 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF15879 MWFE NADH-ubiquinone oxidoreductase MWFE subunit
Representative CDS sequence
>Potri.016G140900.1 pacid=42810344 polypeptide=Potri.016G140900.1.p locus=Potri.016G140900 ID=Potri.016G140900.1.v4.1 annot-version=v4.1
ATGGGATGGAGATGGGTAGAAGCAGTATTGCCATTAGGAATCATAGCAGGAATGCTTTGCATAGCTGGTAACGTTCAGTATGTCATCCACACGAAAGCTC
ATGGCCGTCCTAAGCACATCGGCAACGATATGTGGGACGTCGCTATGGAGAGAAGGGACAAAAACCTCATCTCCTCCTCCTCCTCCTCCTAG
AA sequence
>Potri.016G140900.1 pacid=42810344 polypeptide=Potri.016G140900.1.p locus=Potri.016G140900 ID=Potri.016G140900.1.v4.1 annot-version=v4.1
MGWRWVEAVLPLGIIAGMLCIAGNVQYVIHTKAHGRPKHIGNDMWDVAMERRDKNLISSSSSS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G08610 unknown protein Potri.016G140900
[exp]
0 1
AT4G00585 unknown protein Potri.014G079800
[exp]
3.16 0.7244
AT3G12587 Oligosaccaryltransferase (.1) Potri.008G053300
[exp]
3.46 0.7725
AT2G31490 unknown protein Potri.006G077400
[exp]
5.47 0.7721
AT3G07230 wound-responsive protein-relat... Potri.002G246300
[exp]
25.59 0.7509
AT3G48680 AtCAL2, GAMMACA... gamma carbonic anhydrase-like ... Potri.015G098600
[exp]
28.91 0.7532
AT4G17085 Putative membrane lipoprotein ... Potri.003G085400
[exp]
30.00 0.6787
AT1G07890 ATAPX01, CS1, A... maternal effect embryo arrest ... Potri.009G015400
[exp]
32.72 0.6348 APX.3
AT1G48440 B-cell receptor-associated 31-... Potri.012G042700
[exp]
36.05 0.7056
AT3G03070 NADH-ubiquinone oxidoreductase... Potri.013G082100
[exp]
36.87 0.7424
AT5G24400 PGL3, EMB2024 6-PHOSPHOGLUCONOLACTONASE 3, E... Potri.015G007200
[exp]
51.00 0.6784

Potri.016G140900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.