Plant FIBer expression Database

Potri.016G141300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G01970 353 / 3e-119 unknown protein
AT1G30050 274 / 6e-88 unknown protein
AT2G30530 249 / 2e-78 unknown protein
AT4G02800 107 / 1e-25 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G111900
[exp]
617 / 0 AT5G01970 352 / 2e-118 unknown protein
Potri.019G132300
[exp]
279 / 1e-88 AT2G30530 253 / 9e-80 unknown protein
Potri.013G160100
[exp]
265 / 2e-83 AT2G30530 266 / 8e-85 unknown protein
Potri.002G053100
[exp]
103 / 2e-24 AT4G02800 276 / 3e-91 unknown protein
Potri.005G209400
[exp]
94 / 9e-21 AT4G02800 291 / 3e-97 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10031947
[exp]
248 / 2e-78 AT5G01970 263 / 1e-85 unknown protein
Lus10035153
[exp]
245 / 8e-76 AT5G01970 264 / 8e-85 unknown protein
Lus10019115
[exp]
231 / 7e-71 AT2G30530 267 / 5e-86 unknown protein
Lus10034444
[exp]
216 / 6e-65 AT2G30530 268 / 3e-86 unknown protein
Lus10035609
[exp]
145 / 2e-39 AT1G30050 187 / 5e-56 unknown protein
Lus10003240
[exp]
122 / 1e-29 AT5G01990 610 / 0.0 Auxin efflux carrier family protein (.1)
Lus10014668
[exp]
111 / 7e-27 AT4G02800 262 / 1e-85 unknown protein
Lus10022037
[exp]
107 / 1e-25 AT4G02800 276 / 1e-91 unknown protein
Lus10000658
[exp]
106 / 4e-25 AT4G02800 266 / 1e-87 unknown protein
PFAM info
Representative CDS sequence
>Potri.016G141300.1 pacid=42809576 polypeptide=Potri.016G141300.1.p locus=Potri.016G141300 ID=Potri.016G141300.1.v4.1 annot-version=v4.1
ATGGCATATAAGAGAAGACAAGGAATCACTAGGGCATCAACGTTCAAAGAAGAGATTTATCGCCCACCAGAACATGACCACCACCATGATAACATCAACA
AAAATAGTAATAATAACGATGACACATTGTTTACAACATCTTCTTCATCCCCATCTCTGGCTGCTCAGGCTATTAGGGCATCTGCTGCTCATCGTGAATC
ATCCCTTTCTTCTGCATATGCTGGTGGCTCTATCTCTCAGAGATCTAAGGTGTTCGATGCATATGAAGACAAACTGGGAACAAATGGGTCGAAGGGTTTT
TGGGGTGTTCTTGCTCAGAAAGCAAAAGCAATTATCGAGGAAGATAATTTGTCTCAACAATTTGAAACATCAGCAAGATCCAGGTTCCAGATGCCAGATA
CCTCTGCAGGTGGTCAGTATTCATACCGTACACCTGAGGGCTTTAGGAAAATGGATAATCCTACACTGCGAAAGGGCTTGGATAAGATTACTTCTTCCCT
TAATCAAATTGGTGATACCTTTGAAAAGGCTTTCGAGGAAGGTCGCACTATTGTGGAAAACAAGACTGCAGATATCATCCAAGAAACTCGCAAACTGCAA
ATCAGGCGAAAAGGTTCTGAGGCACATAATCAAGGTCCTGGTGAAAATACTTCATGGATGCAACAGCCTACACAGCCACTGAACCATGAAAATCAATTGA
AGGCATCTCGCGACGTTGCAATGGCTACTGCTGCCAAAGCAAAACTTCTTCTGCGGGAACTGAAGACAGTTAAAGCAGACCTGGCTTTTGCTAAACAAAG
ATGTTCACAGCTTGAAGAAGAGAATAAGATCCTTCGGGAGAGCTTTGAAAAGGGCAGCACTGCTGACGATGATGATCTGATCCGCCTTCAATTGGAGACA
CTTTTGGCTGAGAAGGCCCGTCTAGCACATGACAATTCTGTTTATGCTCGTGAGAACCGCTTTCTGAGAGAAATTGTTGAATACCACCAACTTACAATGC
AGGATGTTGTTTATTTGGACGAAGGCAGTGAAGAAGTCACAGAAGTTTATCCCTTTACGAGGATGCTTTCTGTTTCTCCACCCTCCTCCAGCTCACCTTC
TGAGACCACATTACGTTCACTATTTGAGAAGGAAATCCATCCTGTCCCTGACCTACCACCAGAAACACAGGAGGTTTCAGAAAGTGATGCCCCCCCAAGT
GCAGGTGCACCTGCACTCAAGGAAGTAGAAGAAGATGCAGGAAGAGATGCCCCCCCAAGTGCAGGTATGCCTGTCCATAAGGAAAAAGAAGAGGCAAAAC
ATATCCCTGCAAACAAGCAAGCAGATGAGAAAAGCACTCCAAAGTCTCCAATACACAAGGAGGAAAAGGAAAAAACATCCTCATCGGTATCACCTGGCGT
AAACAAGTAG
AA sequence
>Potri.016G141300.1 pacid=42809576 polypeptide=Potri.016G141300.1.p locus=Potri.016G141300 ID=Potri.016G141300.1.v4.1 annot-version=v4.1
MAYKRRQGITRASTFKEEIYRPPEHDHHHDNINKNSNNNDDTLFTTSSSSPSLAAQAIRASAAHRESSLSSAYAGGSISQRSKVFDAYEDKLGTNGSKGF
WGVLAQKAKAIIEEDNLSQQFETSARSRFQMPDTSAGGQYSYRTPEGFRKMDNPTLRKGLDKITSSLNQIGDTFEKAFEEGRTIVENKTADIIQETRKLQ
IRRKGSEAHNQGPGENTSWMQQPTQPLNHENQLKASRDVAMATAAKAKLLLRELKTVKADLAFAKQRCSQLEEENKILRESFEKGSTADDDDLIRLQLET
LLAEKARLAHDNSVYARENRFLREIVEYHQLTMQDVVYLDEGSEEVTEVYPFTRMLSVSPPSSSSPSETTLRSLFEKEIHPVPDLPPETQEVSESDAPPS
AGAPALKEVEEDAGRDAPPSAGMPVHKEKEEAKHIPANKQADEKSTPKSPIHKEEKEKTSSSVSPGVNK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G01970 unknown protein Potri.016G141300
[exp]
0 1
AT3G46060 ARA3, Ara-3, At... RAB GTPase homolog 8A (.1.2.3) Potri.009G027900
[exp]
1.00 0.9285 RAB8.1
AT3G61660 unknown protein Potri.002G168300
[exp]
2.44 0.9190
AT4G14147 ARPC4 protein binding (.1.2) Potri.017G057400
[exp]
4.35 0.8869
AT1G32050 SCAMP family protein (.1) Potri.001G134100
[exp]
4.47 0.9101
AT2G28310 Protein of unknown function (D... Potri.009G011000
[exp]
6.00 0.9152
AT1G52150 HD ATHB15, ICU4, C... INCURVATA 4, CORONA, Homeobox-... Potri.001G188800
[exp]
6.92 0.9034 ATHB.12
AT2G44610 RAB6, AtRABH1b,... Ras-related small GTP-binding ... Potri.002G135500
[exp]
7.21 0.8829 Pt-RAB6.1
AT5G03530 ATRABALPHA, AtR... ARABIDOPSIS THALIANA RAB GTPAS... Potri.010G229600
[exp]
7.41 0.8991 RAB1.1
AT4G00750 S-adenosyl-L-methionine-depend... Potri.014G075700
[exp]
7.74 0.9140
AT1G49890 QWRF2 QWRF domain containing 2, Fami... Potri.014G017500
[exp]
8.94 0.8896

Potri.016G141300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.