Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20670 143 / 1e-35 DNA-binding bromodomain-containing protein (.1) AT5G55040 139 / 1e-33 DNA-binding bromodomain-containing protein (.1.2) AT1G76380 134 / 8e-33 DNA-binding bromodomain-containing protein (.1.2.3) AT5G46550 65 / 1e-10 DNA-binding bromodomain-containing protein (.1) AT1G32750 62 / 2e-09 GTD1, TAF1, HAF1, HAC13, HAF01 TBP-ASSOCIATED FACTOR 1, HISTONE ACETYLTRANSFERASE OF THE TAFII250 FAMILY 1, HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 13, HAC13 protein (HAC13) (.1) AT3G19040 61 / 4e-09 TAF1b, HAF2, TAF1 TBP-ASSOCIATED FACTOR 1B, TBP-ASSOCIATED FACTOR 1, histone acetyltransferase of the TAFII250 family 2 (.1) AT3G01770 56 / 1e-07 ATBET10 bromodomain and extraterminal domain protein 10 (.1) AT1G06230 54 / 2e-07 GTE4 global transcription factor group E4 (.1.2.3) AT1G17790 54 / 3e-07 DNA-binding bromodomain-containing protein (.1) AT1G73150 54 / 3e-07 GTE3 global transcription factor group E3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G112000 [exp] 1078 / 0 AT1G20670 142 / 4e-35 DNA-binding bromodomain-containing protein (.1) Potri.019G132601 [exp] 226 / 3e-64 AT1G20670 137 / 1e-33 DNA-binding bromodomain-containing protein (.1) Potri.004G206200 [exp] 148 / 9e-37 AT1G20670 316 / 2e-97 DNA-binding bromodomain-containing protein (.1) Potri.009G167500 [exp] 141 / 1e-34 AT1G20670 316 / 1e-97 DNA-binding bromodomain-containing protein (.1) Potri.002G009100 [exp] 139 / 3e-34 AT1G20670 449 / 2e-149 DNA-binding bromodomain-containing protein (.1) Potri.005G252200 [exp] 129 / 1e-30 AT1G20670 432 / 2e-142 DNA-binding bromodomain-containing protein (.1) Potri.001G376400 [exp] 62 / 7e-10 AT1G06230 267 / 4e-82 global transcription factor group E4 (.1.2.3) Potri.005G217400 [exp] 62 / 1e-09 AT3G54610 707 / 0.0 HISTONE ACETYLTRANSFERASE 1, general control non-repressible 5, BIG TOP, histone acetyltransferase of the GNAT family 1 (.1) Potri.002G045900 [exp] 60 / 3e-09 AT3G54610 718 / 0.0 HISTONE ACETYLTRANSFERASE 1, general control non-repressible 5, BIG TOP, histone acetyltransferase of the GNAT family 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022999 [exp] 152 / 3e-39 AT1G20670 316 / 2e-100 DNA-binding bromodomain-containing protein (.1) Lus10001391 [exp] 149 / 5e-38 AT1G20670 306 / 1e-96 DNA-binding bromodomain-containing protein (.1) Lus10043121 [exp] 138 / 2e-33 AT5G55040 533 / 9e-176 DNA-binding bromodomain-containing protein (.1.2) Lus10032629 [exp] 135 / 1e-32 AT5G55040 525 / 1e-172 DNA-binding bromodomain-containing protein (.1.2) Lus10030739 [exp] 131 / 2e-31 AT1G20670 418 / 4e-138 DNA-binding bromodomain-containing protein (.1) Lus10013220 [exp] 129 / 7e-31 AT1G20670 431 / 5e-143 DNA-binding bromodomain-containing protein (.1) Lus10027579 [exp] 62 / 2e-09 AT1G32750 1622 / 0.0 TBP-ASSOCIATED FACTOR 1, HISTONE ACETYLTRANSFERASE OF THE TAFII250 FAMILY 1, HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 13, HAC13 protein (HAC13) (.1) Lus10008553 [exp] 62 / 2e-09 AT1G32750 1623 / 0.0 TBP-ASSOCIATED FACTOR 1, HISTONE ACETYLTRANSFERASE OF THE TAFII250 FAMILY 1, HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 13, HAC13 protein (HAC13) (.1) Lus10033623 [exp] 61 / 4e-09 AT1G06230 493 / 9e-164 global transcription factor group E4 (.1.2.3) Lus10033624 [exp] 61 / 4e-09 AT1G06230 494 / 2e-163 global transcription factor group E4 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00439 [poplar] [flax] Bromodomain Bromodomain
Representative CDS sequence Show only first row Show all	>Potri.016G141400.1 pacid=42809142 polypeptide=Potri.016G141400.1.p locus=Potri.016G141400 ID=Potri.016G141400.1.v4.1 annot-version=v4.1 ATGAAGAGGGGGAGAATGCTGAGAGAGGGAGACAGAAGGAGTCCTAGGATATCTGCTTTGGATTTGTGGAAGGCTCAGCCACCAAGGAGGACCACTGTTG CTAAAAAAACTAGGCTTACTAGGAGCATTACTAGCACTAGTACCAGCACTGCTGCCGAGGTACAAGACAAGGAGTTAGACCAGCAAAAGGAGAACCAAAC TGAGGGTCCAGCCTGTATGACTAGGGCTAAGAAAAAGAGGAAGCTTAAACCTCCTCAAGATGTGGCTTCTACTCCCAATTCTCAACAGGAGCCCAAGTCA AGTGATGTATCGGATGACAGAGAAATAAGTTACGAAGATCATCCAATCAGTAGTGATGAACCCATTTTGCAGAATAAAGACAGCCCAAAACAGAAAGGAC AAGCTGATTCTCCAGATCAACCATCTAGTTCGCCATGTACATCATGGGTGCCAGAAAAACGCATTCTTGAGCATATCATTGACGTATTACAGAGGAGAGA TACCCATGAAATATTTGCAGAACCAGTTGACCCAAATGAGGTTGAGGAGTACTATGAAATCATTAAAGAGCCTATGGATTTCGGCACCATGAGGGCTAAA CTACATGAGGGAATGTATAAAAGTCTTGAACAATTTGAGCATGATGTGTTTCTAATATCTGGAAATGCAATGCACTTTAATTCCTCTTCCACCATTTATT TCAGACAGGCTCGTGCCATAGATGAATTAGCAAAGAAGGTTTTCCATGTTCTTAGAACTGATCCCGAGAATTTTGAACTGGAATTCTTGGGGACGAGAAG GAGAAATGGTAGAAGGCCCCAACATGAAGCCAAGGGTTCAAATTATAGCTCATCTCCTAAGGTTGCGACGAGTTCAAAATCGAGTAATACAGCTGTCCAT GTGTCTCCAAAACCCACCCCGTGTTTAACAAGTTGTTCATCAAGTCTGAAAAGAGCAATCCAATTGAACTCTGGATGTTTGGGTATTACAACTCATTCTG ATGCAACAGACGACAGAGTATTTTTTGGTTCTGGAGTCAGTAAACGATCTTCTGATGAAACAGATAGGCGTTCTACATATAAACCATGGATGTCCTTCCT CAATGAGAACCATCCAATTACTTCATCAATTTATAGTAATTCAAAGCCACTGGTGCATGTGAATCAGCAGGATACTTCCTATAGCAAAAGCTTACTGTTG TTTGTTAAGGACTTAGGGCCAACTGCTCAAATGGTTGCTAGACGCAAGTTAAATGGATGGTTGAACACTGCTGCCAATTTTTCAACTCCAGGTTCAAACT TTTGGCTCCAGGCTCCAAACTGTCAAAATTTTGCAGCATCAGCCTCTGCTCAGTATCCACCTACTTTTGATGCTCCACCCTCTGCTGCCTGCCAAAATAT AAGCCAGGGTGAAAGAATAGACATGTTTGATGCCAATAAAGGAGGCAGAGCTTATGCTGGTAACAAATTGAGCTTGCATGGAACTTCAAGTGAAGTGGCG CCAAACCATAATTGTTACAGTAACTTTGGTGCCATTAAAAGTGAAGTTTCGTTTGCTAATGAAATGGATGTTGCCAATGTCTCAAAGAATGAAAAGCCTC ACCAAAGCCAAAACAGAGGCCTTCAACAAGGTTCACATTCATATGTCACTGATGCTAGAGATCTGAATCTTTTAACTGCTGATTTAAGTATAAATGATGA CGATTCAGCAATGTGGAAAGTGGGGAAAAGCAAGATGGATAACAAACCACCATCATTGGATTTAGGTTTCAAGGACTCTGAGTCAAATGCTTTGGAAAGC AGGTTGAGTGATAGTTACAGTTTTTCACCATCTTCATGGCCATTAAAAACCACAGGCATGTCAAGTTTTAATCGAAATATGGGCAATACACGTAGTGGCA GCACACGTATTCTAAGTACTCAATGTCGAGGTGGTGATCAAGCCTTTTCTACTCAAGGTCCAAGTCATGGACTTGGTGGTTCATCTGAGAGAATTCCTGC CTTGAAACTAAGCGAACAACCTACACCTGTTTCTGGTCAGTTCATCTTTGATCTGCCATTTTTAAAGACACGGCTTGACCAGATAAATTCTCTGGGGCAG AATAGATTTTCACAGCATGGTTCGGGTATGCAGGGACCTTTTCCAAACAGAACAGGCGAGACTTACAATGATAGCCGACCACATTCCTCTTTGAATACTC AGCATGCTAACTTGGCTCTTCAGCTGTAA
AA sequence Show only first row Show all	>Potri.016G141400.1 pacid=42809142 polypeptide=Potri.016G141400.1.p locus=Potri.016G141400 ID=Potri.016G141400.1.v4.1 annot-version=v4.1 MKRGRMLREGDRRSPRISALDLWKAQPPRRTTVAKKTRLTRSITSTSTSTAAEVQDKELDQQKENQTEGPACMTRAKKKRKLKPPQDVASTPNSQQEPKS SDVSDDREISYEDHPISSDEPILQNKDSPKQKGQADSPDQPSSSPCTSWVPEKRILEHIIDVLQRRDTHEIFAEPVDPNEVEEYYEIIKEPMDFGTMRAK LHEGMYKSLEQFEHDVFLISGNAMHFNSSSTIYFRQARAIDELAKKVFHVLRTDPENFELEFLGTRRRNGRRPQHEAKGSNYSSSPKVATSSKSSNTAVH VSPKPTPCLTSCSSSLKRAIQLNSGCLGITTHSDATDDRVFFGSGVSKRSSDETDRRSTYKPWMSFLNENHPITSSIYSNSKPLVHVNQQDTSYSKSLLL FVKDLGPTAQMVARRKLNGWLNTAANFSTPGSNFWLQAPNCQNFAASASAQYPPTFDAPPSAACQNISQGERIDMFDANKGGRAYAGNKLSLHGTSSEVA PNHNCYSNFGAIKSEVSFANEMDVANVSKNEKPHQSQNRGLQQGSHSYVTDARDLNLLTADLSINDDDSAMWKVGKSKMDNKPPSLDLGFKDSESNALES RLSDSYSFSPSSWPLKTTGMSSFNRNMGNTRSGSTRILSTQCRGGDQAFSTQGPSHGLGGSSERIPALKLSEQPTPVSGQFIFDLPFLKTRLDQINSLGQ NRFSQHGSGMQGPFPNRTGETYNDSRPHSSLNTQHANLALQL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G20670			DNA-binding bromodomain-contai...		Potri.016G141400 [exp]	0	1
AT1G79620			Leucine-rich repeat protein ki...		Potri.006G114400 [exp]	2.00	0.9143
AT5G05970		NEDD1	NEURAL PRECURSOR CELL EXPRESSE...		Potri.010G197700 [exp]	4.47	0.9113
AT4G02630			Protein kinase superfamily pro...		Potri.005G139500 [exp]	7.34	0.8965
AT5G07610			F-box family protein (.1)		Potri.003G215900 [exp]	7.41	0.8867
AT3G12180			Cornichon family protein (.1)		Potri.016G051000 [exp]	8.94	0.8956
AT1G79670		WAKL22, RFO1	RESISTANCE TO FUSARIUM OXYSPOR...		Potri.001G040000 [exp]	10.58	0.8743
AT3G55990		TBL29, ESK1	TRICHOME BIREFRINGENCE-LIKE 29...		Potri.008G069950 [exp]	11.22	0.8597
AT1G78980		SRF5	STRUBBELIG-receptor family 5 (...		Potri.007G002600 [exp]	11.40	0.8676
AT3G26790	B3	FUS3	FUSCA 3, AP2/B3-like transcrip...		Potri.001G322700 [exp]	12.48	0.8349
AT3G57880			Calcium-dependent lipid-bindin...		Potri.011G052000 [exp]	20.19	0.8429

Compare expression of checked genes

Potri.016G141400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.