Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01980 226 / 1e-69 RING/U-box superfamily protein (.1) AT5G08139 123 / 9e-32 RING/U-box superfamily protein (.1) AT3G19950 104 / 2e-25 RING/U-box superfamily protein (.1) AT3G02340 103 / 1e-24 RING/U-box superfamily protein (.1) AT5G15820 102 / 2e-24 RING/U-box superfamily protein (.1) AT3G46620 96 / 6e-22 zinc finger (C3HC4-type RING finger) family protein (.1) AT2G40830 95 / 8e-22 RHC1A RING-H2 finger C1A (.1.2.3) AT5G20910 94 / 9e-22 AIP2 ABI3-interacting protein 2, RING/U-box superfamily protein (.1) AT5G60820 96 / 1e-21 RING/U-box superfamily protein (.1) AT5G59550 94 / 4e-21 zinc finger (C3HC4-type RING finger) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G112100 [exp] 524 / 0 AT5G01980 293 / 1e-92 RING/U-box superfamily protein (.1) Potri.015G028400 [exp] 122 / 1e-31 AT3G19950 256 / 2e-83 RING/U-box superfamily protein (.1) Potri.012G036700 [exp] 116 / 1e-29 AT3G19950 273 / 5e-90 RING/U-box superfamily protein (.1) Potri.015G047900 [exp] 111 / 5e-27 AT5G08139 201 / 3e-60 RING/U-box superfamily protein (.1) Potri.012G065300 [exp] 111 / 7e-27 AT5G08139 178 / 4e-51 RING/U-box superfamily protein (.1) Potri.007G074014 [exp] 101 / 2e-24 AT3G19950 278 / 5e-93 RING/U-box superfamily protein (.1) Potri.005G090500 [exp] 101 / 2e-24 AT3G19950 279 / 4e-93 RING/U-box superfamily protein (.1) Potri.001G243300 [exp] 99 / 4e-23 AT3G46620 239 / 8e-76 zinc finger (C3HC4-type RING finger) family protein (.1) Potri.016G029300 [exp] 93 / 3e-21 AT2G40830 317 / 9e-108 RING-H2 finger C1A (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031422 [exp] 119 / 9e-31 AT5G64920 210 / 5e-66 COP1-interacting protein 8 (.1) Lus10010179 [exp] 110 / 7e-28 AT3G19950 285 / 6e-96 RING/U-box superfamily protein (.1) Lus10008874 [exp] 104 / 1e-24 AT5G08139 198 / 3e-59 RING/U-box superfamily protein (.1) Lus10023235 [exp] 103 / 3e-24 AT5G08139 194 / 7e-58 RING/U-box superfamily protein (.1) Lus10040783 [exp] 94 / 7e-22 AT5G59550 228 / 1e-72 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10004712 [exp] 94 / 2e-21 AT5G59550 294 / 6e-97 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10040278 [exp] 91 / 7e-21 AT5G59550 224 / 2e-71 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10017383 [exp] 84 / 7e-20 AT3G19950 127 / 8e-37 RING/U-box superfamily protein (.1) Lus10013235 [exp] 89 / 8e-20 AT2G40830 334 / 7e-115 RING-H2 finger C1A (.1.2.3) Lus10030755 [exp] 89 / 1e-19 AT2G40830 336 / 2e-115 RING-H2 finger C1A (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13639 [poplar] [flax] zf-RING_2 Ring finger domain
Representative CDS sequence Show only first row Show all	>Potri.016G141600.5 pacid=42809741 polypeptide=Potri.016G141600.5.p locus=Potri.016G141600 ID=Potri.016G141600.5.v4.1 annot-version=v4.1 ATGTTTATTCAAGCAGATGAGGGAAGCAATTTTGACAGTGATACCGACATCGATCCAATGCATGCTGGTCTCCACCAATGGAACTCTGATGACCTGGAAG AGGAGGAAGAAGAAGAAGAGGATGGTGAATGGGAAGAGGCTGATATTGAGGAAGATACAATTGAATCTGTAGAAGCAGGAGCTCGACTTCGAAATCTGTT TGTTTCAAGTCCTAGTGAAGTTAATGGCCCTGTTAGTTGGCACAGGCAGTCCCATTCACCAGAATTTGAGGGCCTGAATCGGTGGAGAACCAGGCAGAGT AGACAAGCACATAACCGCGACTTCTTTGCTAACTTGGAAGAATTGGAATTACCACAGCACATATGGAATTATGAGTTGGCAGATTATGCGACAGGCTTCG GGGATTTGCTTGAAGCTCTTACTCATTCTGACATTGGAAGGAGAGGAGCACCTCCTGCAGCTCTGTCTTTTGTGAATAATCTACCACTTGTGATCATCAA TGAGGAACATGAGAGGCATGATGGTGTAGCTTGTGCAATCTGCAAGGATCTTTTGCCAATCGGCACAGAAGTTAACCAACTTCCATGCCTTCACCTATAT CATCCTTACTGTATATTGCCATGGCTGAGTGCACGAAATTCATGTCCTCTCTGCAGGTACGAATTTCCAACTGATGATAAAGACTATGAGGAGGGTAAGC AAAACTCTAGTACCAGAATGGGGATCCATGATGTTCAGCAGCAGGAAGCTAGTGAGGACAGTTCCTCTGATGTCTCAGATGAACCTCTTGAACATGGTCA AATCGGAAGGGAACTCCTAGATGTGGGCCTGCCCTTAAGTACTTCTGGCAGAGAGGGCACTAGAAGGAGATGGTTTCTGCTTGCTGCTGCTCCCCTTGTT AGCCTTTTGGGTATTGTCCTTGTGATGTGGTGGGACAATCCTCAAGGAAGGCGGGCAAATAGTCATGGCAACTTCCCTGAGCGAGGCTTGTATCAGATTC AAGTTTCTGGCCCTCCCCAACCCAACCAAAAGGTTAATGAGAGGAGAAGATGGTGGTTTTTTTCCTGA
AA sequence Show only first row Show all	>Potri.016G141600.5 pacid=42809741 polypeptide=Potri.016G141600.5.p locus=Potri.016G141600 ID=Potri.016G141600.5.v4.1 annot-version=v4.1 MFIQADEGSNFDSDTDIDPMHAGLHQWNSDDLEEEEEEEEDGEWEEADIEEDTIESVEAGARLRNLFVSSPSEVNGPVSWHRQSHSPEFEGLNRWRTRQS RQAHNRDFFANLEELELPQHIWNYELADYATGFGDLLEALTHSDIGRRGAPPAALSFVNNLPLVIINEEHERHDGVACAICKDLLPIGTEVNQLPCLHLY HPYCILPWLSARNSCPLCRYEFPTDDKDYEEGKQNSSTRMGIHDVQQQEASEDSSSDVSDEPLEHGQIGRELLDVGLPLSTSGREGTRRRWFLLAAAPLV SLLGIVLVMWWDNPQGRRANSHGNFPERGLYQIQVSGPPQPNQKVNERRRWWFFS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G01980			RING/U-box superfamily protein...		Potri.016G141600 [exp]	0	1
AT5G13890			Family of unknown function (DU...		Potri.010G067000 [exp]	1.00	0.9363
AT3G11470			4'-phosphopantetheinyl transfe...		Potri.006G211300 [exp]	2.82	0.9215
AT1G22060			unknown protein		Potri.008G029800 [exp]	3.00	0.9301
AT3G29180			Protein of unknown function (D...		Potri.017G088000 [exp]	3.16	0.9238
AT3G20860		ATNEK5	NIMA-related kinase 5 (.1)		Potri.016G051900 [exp]	3.46	0.9253
AT1G29200			O-fucosyltransferase family pr...		Potri.011G068300 [exp]	5.65	0.9347
AT5G55990		ATCBL2, CBL2	calcineurin B-like protein 2 (...		Potri.006G002900 [exp]	7.48	0.9047
AT1G71790			Subunits of heterodimeric acti...		Potri.005G199600 [exp]	7.74	0.9149
AT5G62580			ARM repeat superfamily protein...		Potri.015G069200 [exp]	8.36	0.9215
AT5G35200			ENTH/ANTH/VHS superfamily prot...		Potri.018G125284 [exp]	8.48	0.9220

Compare expression of checked genes

Potri.016G141600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.