Plant FIBer expression Database

Potri.016G142100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G28330 56 / 4e-10 unknown protein
AT1G08035 40 / 0.0002 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G112600
[exp]
368 / 2e-131 AT2G28330 59 / 4e-11 unknown protein
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.016G142100.1 pacid=42810287 polypeptide=Potri.016G142100.1.p locus=Potri.016G142100 ID=Potri.016G142100.1.v4.1 annot-version=v4.1
ATGGATTCTGAATCTTGTACGGACCAAACAAACAAAACCCAAGATGAGCAAGCTAGCAAGGCCATTGTTGAGGCATATCTAGGTCCTGTCACCCCTGATT
CTATCAAAGAGACTGGGGATTTCCCACTCTCTCCAGTCACTTTAGTTAAAAAACTGCCCAAAGTTCTCTCCTTTACCTCTAAAACCAACAGAAGTGAGGA
CCATTTTGACAACTTTAGCAGCCCACGAACACCCAAGGACGGTGTTTTTGACCCTTTTGCTCCTGGCCATGAAGACAAAATCCTGGCTCCTCAGTGCAAG
AAATACAATGATGAAGCGAGGGCCAGTGTTGTGCGCCGGCTTAATTTTACTTCTTCTTTCAGAGCCTTGAGAAATGGGAGTTTTGGTGATGATGTGGAGT
TCTTATCGGATGAAGAGATGTTTGAATCTGTGTATGAAAGTTTATTGGAAGCTATTGTTTCGAAGCAGACTGAGGGTGCTCTTGAAGAAATGACAAAATT
AGAATGGGATTCTGATGACTGCACAACACCGCCTGCAGCTCCTATTCTAACCGGAGTTCCTGATACTTGTCCCGCCGCTCCTCTGAAGCGAAAAGGTAAA
TCTAGGATTATTGATTTGGGATTATGCAGAAAGCTTGAATTCTAA
AA sequence
>Potri.016G142100.1 pacid=42810287 polypeptide=Potri.016G142100.1.p locus=Potri.016G142100 ID=Potri.016G142100.1.v4.1 annot-version=v4.1
MDSESCTDQTNKTQDEQASKAIVEAYLGPVTPDSIKETGDFPLSPVTLVKKLPKVLSFTSKTNRSEDHFDNFSSPRTPKDGVFDPFAPGHEDKILAPQCK
KYNDEARASVVRRLNFTSSFRALRNGSFGDDVEFLSDEEMFESVYESLLEAIVSKQTEGALEEMTKLEWDSDDCTTPPAAPILTGVPDTCPAAPLKRKGK
SRIIDLGLCRKLEF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G28330 unknown protein Potri.016G142100
[exp]
0 1
Potri.019G015800
[exp]
1.41 0.8840
AT2G17220 Kin3 kinase 3, Protein kinase super... Potri.007G062700
[exp]
4.24 0.8299
AT3G07790 DGCR14-related (.1) Potri.002G222100
[exp]
8.66 0.8359
AT5G51050 APC2 ATP/phosphate carrier 2, Mitoc... Potri.015G108900
[exp]
10.19 0.7435
AT5G13860 ELC-LIKE, ATELC... ELCH-like (.1) Potri.001G034200
[exp]
14.14 0.7972
AT1G21380 Target of Myb protein 1 (.1) Potri.005G184900
[exp]
18.52 0.8296
AT1G70000 MYB myb-like transcription factor ... Potri.010G039233
[exp]
20.73 0.8315
AT2G01290 RPI2 ribose-5-phosphate isomerase 2... Potri.008G127600
[exp]
21.16 0.8176
AT3G21220 ATMAP2K_ALPHA, ... ARABIDOPSIS THALIANA MITOGEN-A... Potri.008G009800
[exp]
32.31 0.7997 MKK4.2
AT5G13890 Family of unknown function (DU... Potri.008G170900
[exp]
32.55 0.7686

Potri.016G142100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.