Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54200 162 / 3e-50 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT2G46150 79 / 8e-18 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT3G05975 67 / 6e-14 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT4G13270 58 / 3e-10 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT4G23930 49 / 2e-07 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1), Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G112800 [exp] 261 / 3e-89 AT3G54200 159 / 7e-49 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.002G230400 [exp] 99 / 8e-26 AT2G46150 82 / 3e-19 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.011G025100 [exp] 93 / 2e-23 AT2G46150 77 / 3e-17 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.016G142200 [exp] 91 / 9e-23 AT3G05975 105 / 2e-28 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.006G112700 [exp] 89 / 4e-22 AT3G05975 127 / 6e-37 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.002G165100 [exp] 77 / 2e-17 AT2G46150 184 / 1e-58 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.003G133400 [exp] 70 / 1e-14 AT2G46150 164 / 7e-51 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.001G098200 [exp] 64 / 1e-12 AT1G64065 102 / 2e-27 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.001G098100 [exp] 59 / 1e-10 AT2G46150 171 / 2e-53 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018185 [exp] 187 / 2e-60 AT3G54200 153 / 9e-47 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10003238 [exp] 179 / 8e-57 AT3G54200 143 / 3e-42 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10035612 [exp] 176 / 1e-55 AT3G54200 142 / 8e-42 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10025649 [exp] 171 / 3e-54 AT3G54200 152 / 2e-46 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10032671 [exp] 161 / 1e-49 AT3G54200 141 / 1e-41 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10043084 [exp] 159 / 7e-49 AT3G54200 141 / 2e-41 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10018361 [exp] 104 / 6e-28 AT3G54200 91 / 1e-22 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10007649 [exp] 98 / 1e-25 AT3G54200 85 / 2e-20 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10006764 [exp] 94 / 4e-24 AT3G54200 79 / 5e-18 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10020060 [exp] 90 / 6e-22 AT3G54200 72 / 4e-15 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [poplar] [flax] E-set PF03168 [poplar] [flax] LEA_2 Late embryogenesis abundant protein
Representative CDS sequence Show only first row Show all	>Potri.016G142300.1 pacid=42810214 polypeptide=Potri.016G142300.1.p locus=Potri.016G142300 ID=Potri.016G142300.1.v4.1 annot-version=v4.1 ATGGATGTGGAATCGTCAAAAGCTGCTGCAATGAAAGCTGAATCTCCTAAGAAACACAAACGCAGAAACATTTGTTTAGGGGTGACCGCAGCTGTGATCC TCTTTATTTTTCTGCTTTTGCTCATCTTGGGGTTAACGGTGTTCAAGCCCAAACAACCGACAACCACCGTGGATTCCACCTCCATCAGTGACATGAAGGT TTCTTTTGACATAGCCAGGCTAAGAGTGGATGTAAACGTGAGTCTTGACGTGGATCTCTCTATCAAGAATCCGAACAAGGTGAGTGTCAAGTACAAGAAC AGCTCTGCTTTTCTGAATTATAGAGGCCAAGTTGTTGGTGAAGCTCCAATTCCTGCGGGTAAGATTTTAGCAGACAAAACACAACCCATAAACGTAACCG TTACACTTATGGCAGATCGGTTGTTGTCTGATTCGCAGTTTTTTTCTGATGTCATGGCTGGTACTATACCCTTTAATACCTTGACCAAGATTTCTGGAAA AGCTAGCGTTTTTAATCTGTTTAATGTACATATCACTTCTACCAGTAGTTGTGATCTTCTTGTTTTTGTTTCTAATAGAACTATAGGGGATCAAAAGTGC AAGTATAAGACAAAATTGTAG
AA sequence Show only first row Show all	>Potri.016G142300.1 pacid=42810214 polypeptide=Potri.016G142300.1.p locus=Potri.016G142300 ID=Potri.016G142300.1.v4.1 annot-version=v4.1 MDVESSKAAAMKAESPKKHKRRNICLGVTAAVILFIFLLLLILGLTVFKPKQPTTTVDSTSISDMKVSFDIARLRVDVNVSLDVDLSIKNPNKVSVKYKN SSAFLNYRGQVVGEAPIPAGKILADKTQPINVTVTLMADRLLSDSQFFSDVMAGTIPFNTLTKISGKASVFNLFNVHITSTSSCDLLVFVSNRTIGDQKC KYKTKL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G54200			Late embryogenesis abundant (L...		Potri.016G142300 [exp]	0	1
AT5G65110		ATACX2, ACX2	acyl-CoA oxidase 2 (.1.2)		Potri.007G090400 [exp]	3.87	0.9060
AT1G75290			NAD(P)-binding Rossmann-fold s...		Potri.008G116500 [exp]	14.07	0.8768
AT5G60710			Zinc finger (C3HC4-type RING f...		Potri.009G010350 [exp]	14.83	0.8808
AT4G30080	ARF	ARF16	auxin response factor 16 (.1)		Potri.016G090300 [exp]	15.49	0.8513
AT2G28780			unknown protein		Potri.006G082000 [exp]	17.23	0.8458
AT4G15480		UGT84A1	UDP-Glycosyltransferase superf...		Potri.009G095400 [exp]	17.29	0.8474
AT3G17380			TRAF-like family protein (.1)		Potri.017G049200 [exp]	18.81	0.8028
AT1G61720		BAN	BANYULS, NAD(P)-binding Rossma...		Potri.011G031700 [exp]	19.02	0.8907	ANR/BAN2,Pt-BAN.1
AT1G06050			Protein of unknown function (D...		Potri.007G130400 [exp]	24.85	0.8832
AT1G24490		ALB4, ARTEMIS	ARABIDOPSIS THALIANA ENVELOPE ...		Potri.008G182000 [exp]	27.74	0.8557

Compare expression of checked genes

Potri.016G142300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.