Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23590 871 / 0 MED33A, RFR1 REF4-related 1 (.1) AT2G48110 813 / 0 MED33B, REF4 reduced epidermal fluorescence 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G201600 [exp] 944 / 0 AT3G23590 1682 / 0.0 REF4-related 1 (.1) Potri.002G215600 [exp] 931 / 0 AT2G48110 1371 / 0.0 reduced epidermal fluorescence 4 (.1) Potri.014G138400 [exp] 917 / 0 AT2G48110 1424 / 0.0 reduced epidermal fluorescence 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034021 [exp] 954 / 0 AT3G23590 1721 / 0.0 REF4-related 1 (.1) Lus10004434 [exp] 946 / 0 AT3G23590 1722 / 0.0 REF4-related 1 (.1) Lus10000663 [exp] 893 / 0 AT2G48110 1484 / 0.0 reduced epidermal fluorescence 4 (.1) Lus10041229 [exp] 892 / 0 AT3G23590 1595 / 0.0 REF4-related 1 (.1) Lus10029646 [exp] 852 / 0 AT2G48110 1424 / 0.0 reduced epidermal fluorescence 4 (.1) Lus10027998 [exp] 788 / 0 AT2G48110 1370 / 0.0 reduced epidermal fluorescence 4 (.1) Lus10042689 [exp] 143 / 2e-35 AT2G48110 324 / 4e-98 reduced epidermal fluorescence 4 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.016G142500.2 pacid=42809716 polypeptide=Potri.016G142500.2.p locus=Potri.016G142500 ID=Potri.016G142500.2.v4.1 annot-version=v4.1 ATGGAGATGGAGATGGAGATGGAGAAGACGAGAGGAGGAGAGAGTGAAGAATCAGAGAGAAGAAAACTGATATTACTGGAGAAAGTGAAGGAATGCCTTT CACAGAGACAGGATCAGAGACGAGAGGAATCGCCGTTAGTGTGGGCGATGGAAGTTGTGAAATGTTTAAAATCGTTAAAAATGGAAATGCCAAGCCCTGA CTTAGCTGAAATCTTAGTCTCTCATCTCTGTTTCGATAACAACAACGCTTCTACCTGGAAGTTTCTACAACAGGCTCTTTCCTCTCGCCTCCTCTCTCCG CTTCACGTCCTGTCTCTCCTCTCCTCAAGAGTGATTCCGAATCGACGGTCTCAACCGGAGGCCTATAGATTGTTTCTGGAACTTTTCAGCAGATATGCGT TTTCGCTTGATACAGCTGTTGATGATGCTTGCAGAGATAAGATAATTAATTCTGTTGATGCTGCTCTTCAACTGTCACGGACTTATGAAGTTCGTCTTTC AGAGCTTGGACAGTTGTTGGTGTTGTTCTTTTTTACTGTTTTTGTTGGATTGATTGATAGCACTTTTGATGATATGGGATTACAGATAAAATCTTCAGAT ATACAAGAGGGACCATTGGGAACAGATAATTTCCAGGATATGGACATGGATTCCAGAGGGGATTATAGTGTTGAGAGAAATGAGCATCGTGAGCTTTTAA GGAAGAAAAATACTATCATGTCCATGGAAGTGCTGGCAAAGCTTATGGAAAGCAGAAAAGCTGTAGTTCTGCTCCGCCTTGTACACTTTAACATGCCTGA AAAGTTCCATGGCCTCCTACAGAGGCTGTGGTTTTCTGAAGCCAATAAATTGGCATCCTCAAGTATGAAGCCTGCAAGCCAGTTTTTTGAAAGATTCTCA GCCAGCATCCGTAACGTGTGTGATTTTGAATACCAGTTAAACAAGGGCCAACTTGTTCGGATGCTTACGGATATCAGACAACCAAATAAGCGGCTGTCCT ATTGCAATTCTGAATCTGTACAGTCTGCTTGTTGGGCTCCCTTTGATATTTACCTAGAGCACATAATGGATGGGAAGCAACTTCTTATTACTTCAGGAGT TAGTATGCTCACAGAAACAATTATGTTGCTTCAGGTTTTTAATCGGGCAAGCTGGCAAGAAACCTTCCTAGCACTCTGGCTTTCTGCTCTTCGGCTTGTG CAACGAGAACATGACCCTCTGGAAGGCCCTATTCCACATCTTGAGTCTCGTCTTTGTATCCTTTTGACCATTGTCCCTTTAGCAATTGCTAATATTATGG ACGACGAGGCGAAGTTTTGCTCTTCTTCTCTTCAGGGAGCTGCAAAATCTGGGTTCATAGAGATTGATGGACATGAAAATCAAGTGGATGGGAAGGGCCA AACTTCAAGAAAAAATGGGCTTATTTCCTCTCTTCAGGTCCTTGGACAATTCTCCGGGCTCTTATGTCCTCCAGCATCAGTTATTGGTGCAGCTAATGCT GCAGCTGTAAAGGCAGCCAGCTTCATTTCTAATTCCAAGAGTGCAAGGGGTGATTCAGTTTGTGGCACTCACAGCGATTCTGATATAAATGCAGGTGGTA ATTTGAGGCATCTCATTATCGAAGCTTGCATTGCAAGAAAATTAATAGACACGTCTGTATACTATTGGCCTGGTTATGTGTCTGCTTCAGTCATCTCATT TATAGATTTACCACCAGCTCAAAAATCTCCTTGGGTAATATTTATGGAAGGAACGCCATTCAGTAATTCTCTTGTGAATTTTCTACTAGCAACACCTGCT CCAAGTTTAGCAGAGATAGAGAAGCTATATGATATTGCATTAAATGGGTCAGTGGAGGAGAGGTCAGCAGCGGCAAAAATTCTTTGCGGTGCATCCCTAA GCCGTGGATGGAACATTCAGGAGCATGTGCTGCACTACGTGGTGAAGCTTCTTTCTCCTCCTAAGCCTTCTACACATACTGGACAAAGGAATCACTTAAT TGATTATATGCCTATGTTAAGTGCCATCCTTTCTGGAGCTTCTTCAATTGATACTGTCCATGTGCTTTCTTTGCATGGTTTGATCCCTGAAGTTGCAGCT TCTTTAATGCCTCTTTGTGAGGTGTTTGGGTCACTTATGCCTACATCAAGTAACATATCAAGCAAAGGTGATGAGCCCTCCATTTACATGGTTTTTTCTT CTGCCTTTCTCTTTCTTCTGCGTCTATGGAAATTCTACAGACCCCCTATCGAGCAGTGCTTAACAGGAGGAGGAGCCATTGGAGGTGAACTCACTTTGGA GTATTTATTATTATTGCGCAATGGTCGCATTGCATCTCACAATTATTCTGCCCAGGATGAAATTAATAGCAATCAGGTTCAGCATGAATATTCATCAGAT AAACCTGAATATGTTGATTTTTATCCAAAACTGCGAGCTTGGTATTGCCAGAACAAGTCCTGTATAGCCTCTCCGCTTTCTGGCATTTCCACTGGAAATC CTGTTCATGAGGTTGCTAATAAAATCTTAAACATGATTTACCGGAAAATGACTAAAAGTGGGTCCTCATCCGGGAATTCTTCAACAGTTACAAGCAATAG TTTATGTGGGTCCTCTCCAAGTACTGCCGAAGATCCTTACCAGAGGCCCATGCTTCCTGCATGGGATGTGTTGGAAGCCATCCCTTTTGTTCTTGAGGCA ATTTTAACAGCTTGTGCTCATGGACGACTTTCATCTCGGGACTTGACCACAGGCCTAAGGGACCTCATTGACTTTCTTCCGGCAACTCTTGGAACCATTG TCACTTACTTTGCTGCAGAAATCACTCGAGGTATATGGAAACCAGTTCCAATGAATGGAACTGATTGGCCTAGTCCAGCAGCGATCCTTTCAGCTGTTGA TTCTGAAATAAAAGAAATACTTGCTGCTGCAGGAGTTGATTTTCCATGTGGTTCCTCTGGGCAATCACCTCCCATGCTTCCATTGCCAATGGCAGCTCTG GTCAGTTTAACCATCACTTTCAAACTCAACAAGAGCCATGAATACATACATGCCGTAGTTGGGCCTGCCCTGGAAAATTGTTCGTCAGGTTGCCCTTGGC CTAGTATTCCTATAATTGGCTCTCTGTGGGCCCAAAAGGTCCGTCGCTGGCATCACTTCATAGTTGTATCATGTGCTCGCTCTGTCTTGAAACGAAATAA AGTAGCCGTTGCCCAGCTCCTGAGGAGTTGCTTCTCATCATTCCTTGGATCACTTAACGATTCCACATCTTTGTTGACCAATCAGAGCAGCGTAAGTCGT CTATTGGGCACCACTATTGCAGTTCCTGGTGTTTCTCCTTCCCTCGCACCTGGATTCCTGTACCTTCGCTCTTGTCGGACTATAGAGGACATTCAATACG TAAATGGTGTGGTCATAGGTCTTGTAACAGAGTATGCAAGGGAATTAGCCACCAGATGGACTGGGATGGACTCCTCTCGCTTGAAGTCTAGCCAGGCATC CCTATCCCATGCAGCTGCCAAGGCAAGGGAAGTTGCCATACTGGGCGCGAGCCTGTTATGCTTGTCAGGTGGGATGAATCTGATTCAAGAGCTTTACCTG GAGACTATCCCAACATGGCTGCTCTCATCCAAAAAAGAGAAACTTGGTGAGGTCAGTGCCGTGTCCCGTATATTGGAAGGGTATGCAATGGCATACATGG TGGTTCTGTCGGGCTCAGCTTTATGGGGCATAGGGCCCACACCTCCAGCATGGGCATTGTCTAGAAGAGCGCGAGTGGTCGGCGTCCACATGGACTTCTT GGTTCGAGTGTTGGAAGGAAATATTTCACTTGGCTGCCATCCAGCCACATGGAAAGCTTATGTATCTTGTGTAGTGGGTCTAGTAGTGAGTTTTGCTCCA GCGTGGATTCAAGTCGTGAAGCTGGAAACATTGAGGAAATTGGCAAGTGGATTGAGAGGGTGGCATGAAAGTGAGCTGGCTCTCTCTCTGCTTGAAAGAG GTGGGGTTGCAGCCATGGGCTCTGTAGCTGAGCTGCTAAATGTAATTAGTTGA
AA sequence Show only first row Show all	>Potri.016G142500.2 pacid=42809716 polypeptide=Potri.016G142500.2.p locus=Potri.016G142500 ID=Potri.016G142500.2.v4.1 annot-version=v4.1 MEMEMEMEKTRGGESEESERRKLILLEKVKECLSQRQDQRREESPLVWAMEVVKCLKSLKMEMPSPDLAEILVSHLCFDNNNASTWKFLQQALSSRLLSP LHVLSLLSSRVIPNRRSQPEAYRLFLELFSRYAFSLDTAVDDACRDKIINSVDAALQLSRTYEVRLSELGQLLVLFFFTVFVGLIDSTFDDMGLQIKSSD IQEGPLGTDNFQDMDMDSRGDYSVERNEHRELLRKKNTIMSMEVLAKLMESRKAVVLLRLVHFNMPEKFHGLLQRLWFSEANKLASSSMKPASQFFERFS ASIRNVCDFEYQLNKGQLVRMLTDIRQPNKRLSYCNSESVQSACWAPFDIYLEHIMDGKQLLITSGVSMLTETIMLLQVFNRASWQETFLALWLSALRLV QREHDPLEGPIPHLESRLCILLTIVPLAIANIMDDEAKFCSSSLQGAAKSGFIEIDGHENQVDGKGQTSRKNGLISSLQVLGQFSGLLCPPASVIGAANA AAVKAASFISNSKSARGDSVCGTHSDSDINAGGNLRHLIIEACIARKLIDTSVYYWPGYVSASVISFIDLPPAQKSPWVIFMEGTPFSNSLVNFLLATPA PSLAEIEKLYDIALNGSVEERSAAAKILCGASLSRGWNIQEHVLHYVVKLLSPPKPSTHTGQRNHLIDYMPMLSAILSGASSIDTVHVLSLHGLIPEVAA SLMPLCEVFGSLMPTSSNISSKGDEPSIYMVFSSAFLFLLRLWKFYRPPIEQCLTGGGAIGGELTLEYLLLLRNGRIASHNYSAQDEINSNQVQHEYSSD KPEYVDFYPKLRAWYCQNKSCIASPLSGISTGNPVHEVANKILNMIYRKMTKSGSSSGNSSTVTSNSLCGSSPSTAEDPYQRPMLPAWDVLEAIPFVLEA ILTACAHGRLSSRDLTTGLRDLIDFLPATLGTIVTYFAAEITRGIWKPVPMNGTDWPSPAAILSAVDSEIKEILAAAGVDFPCGSSGQSPPMLPLPMAAL VSLTITFKLNKSHEYIHAVVGPALENCSSGCPWPSIPIIGSLWAQKVRRWHHFIVVSCARSVLKRNKVAVAQLLRSCFSSFLGSLNDSTSLLTNQSSVSR LLGTTIAVPGVSPSLAPGFLYLRSCRTIEDIQYVNGVVIGLVTEYARELATRWTGMDSSRLKSSQASLSHAAAKAREVAILGASLLCLSGGMNLIQELYL ETIPTWLLSSKKEKLGEVSAVSRILEGYAMAYMVVLSGSALWGIGPTPPAWALSRRARVVGVHMDFLVRVLEGNISLGCHPATWKAYVSCVVGLVVSFAP AWIQVVKLETLRKLASGLRGWHESELALSLLERGGVAAMGSVAELLNVIS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G23590		MED33A, RFR1	REF4-related 1 (.1)		Potri.016G142500 [exp]	0	1
AT1G05270			TraB family protein (.1)		Potri.007G121800 [exp]	2.64	0.8388
AT5G48960			HAD-superfamily hydrolase, sub...		Potri.010G002900 [exp]	11.83	0.8091
AT1G17820			Putative integral membrane pro...		Potri.018G152400 [exp]	14.35	0.8341
AT4G35520		MLH3, ATMLH3	MUTL protein homolog 3 (.1)		Potri.005G101900 [exp]	17.20	0.8246
AT5G01510		RUS5	ROOT UV-B SENSITIVE 5, Protein...		Potri.006G099700 [exp]	22.18	0.8059
AT3G49725			GTP-binding protein, HflX (.1)		Potri.007G007700 [exp]	24.39	0.7997
AT3G04480			endoribonucleases (.1)		Potri.013G047400 [exp]	30.00	0.8271
AT5G40840		SYN2, ATRAD21.1	Sister chromatid cohesion 1 \(...		Potri.017G067400 [exp]	37.97	0.8177	SYN2.1
AT5G53660	GRF	ATGRF7	growth-regulating factor 7 (.1...		Potri.012G022600 [exp]	48.06	0.7634
AT3G50430			unknown protein		Potri.005G133500 [exp]	52.01	0.7726

Compare expression of checked genes

Potri.016G142500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.