Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	CDC2.2,CDC2.4
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38620 536 / 0 CDKB1;2 cyclin-dependent kinase B1;2 (.1.2) AT3G54180 532 / 0 CDC2B, CDKB1;1 CDC2-LIKE GENE, cyclin-dependent kinase B1;1 (.1) AT1G20930 414 / 3e-146 CDKB2;2 cyclin-dependent kinase B2;2 (.1) AT1G76540 410 / 7e-145 CDKB2;1 cyclin-dependent kinase B2;1 (.1) AT3G48750 349 / 5e-121 CDKA1, CDC2A, CDKA;1, CDC2AAT, CDK2 cell division control 2 (.1) AT1G18040 238 / 4e-76 CDKD1;3, AT;CDCKD;3, CAK2AT cyclin-dependent kinase D1;3 (.1) AT1G66750 234 / 3e-75 CDKD1;2, CAK4AT, AT;CDKD;2, CDKD;2 CYCLIN-DEPENDENT KINASE D1;2, CDK-activating kinase 4 (.1) AT1G67580 244 / 6e-75 CDKG;2 Protein kinase superfamily protein (.1.2) AT1G73690 230 / 4e-73 CDKD1;1, AT;CDKD;1, CAK3AT cyclin-dependent kinase D1;1 (.1) AT5G63370 226 / 9e-71 CDKG;1 Protein kinase superfamily protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G113200 [exp] 578 / 0 AT2G38620 545 / 0.0 cyclin-dependent kinase B1;2 (.1.2) Potri.005G257500 [exp] 421 / 5e-149 AT1G76540 552 / 0.0 cyclin-dependent kinase B2;1 (.1) Potri.002G003400 [exp] 413 / 5e-146 AT1G76540 553 / 0.0 cyclin-dependent kinase B2;1 (.1) Potri.004G133500 [exp] 355 / 1e-123 AT3G48750 540 / 0.0 cell division control 2 (.1) Potri.010G056900 [exp] 254 / 1e-78 AT1G67580 864 / 0.0 Protein kinase superfamily protein (.1.2) Potri.008G008400 [exp] 241 / 1e-78 AT3G48750 293 / 3e-99 cell division control 2 (.1) Potri.015G092100 [exp] 248 / 7e-77 AT1G67580 588 / 0.0 Protein kinase superfamily protein (.1.2) Potri.008G178200 [exp] 248 / 2e-76 AT1G67580 858 / 0.0 Protein kinase superfamily protein (.1.2) Potri.012G094600 [exp] 243 / 1e-75 AT1G67580 574 / 0.0 Protein kinase superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003236 [exp] 499 / 3e-179 AT2G38620 493 / 2e-176 cyclin-dependent kinase B1;2 (.1.2) Lus10035614 [exp] 492 / 2e-176 AT2G38620 485 / 1e-173 cyclin-dependent kinase B1;2 (.1.2) Lus10040593 [exp] 408 / 4e-144 AT1G76540 534 / 0.0 cyclin-dependent kinase B2;1 (.1) Lus10021611 [exp] 408 / 5e-144 AT1G76540 531 / 0.0 cyclin-dependent kinase B2;1 (.1) Lus10038755 [exp] 308 / 4e-105 AT3G48750 468 / 7e-169 cell division control 2 (.1) Lus10038754 [exp] 264 / 1e-87 AT3G48750 407 / 2e-144 cell division control 2 (.1) Lus10015816 [exp] 250 / 4e-77 AT1G67580 892 / 0.0 Protein kinase superfamily protein (.1.2) Lus10036995 [exp] 248 / 2e-76 AT1G67580 897 / 0.0 Protein kinase superfamily protein (.1.2) Lus10026790 [exp] 233 / 4e-73 AT5G10270 675 / 0.0 cyclin-dependent kinase C;1 (.1) Lus10017371 [exp] 229 / 2e-72 AT1G18040 564 / 0.0 cyclin-dependent kinase D1;3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.016G142800.1 pacid=42809566 polypeptide=Potri.016G142800.1.p locus=Potri.016G142800 ID=Potri.016G142800.1.v4.1 annot-version=v4.1 ATGGAAAAGTATGAGAAACTGGAGAAGGTCGGGGAAGGCACCTACGGCAAAGTCTATAAAGCCAAAGACAAACTAACAGGTCAGCTCGTTGCTCTCAAAA AAACTCGGCTCCAAATGGATGAGGAAGGCGTTCCCCCTACCGCTCTCCGCGAAGTTTCTCTTCTTCAGATGCTCTCTCAATCTCTCTACGTCGTCCGCCT CCTCTCAGTCGAACACCTTGACGCCAACAACTCCGACGACGACTCCAAATCCAATCTCTACTTGGTTTTCGAGTTTCTCGATGCGGATCTCAAGAAATTC ATCGATTCTCACCGCAAAGGTCCCAACCCTAGACCTCTCTCCCCTTCCCTCATCCAGAGCTTCCTCTTCCAGCTCTGCAAGGGAGTTGCTCACTGTCACA GCCACGGTGTGCTTCACCGCGATCTCAAGCCTCAGAACCTTCTTCTTGATCAGGAGAGAGGTATTCTTAAGATTGCTGATTTGGGATTGGGTCGTGCCTT TACTGTGCCTCTTAAGAGTTATACCCATGAGATTGTCACTCTTTGGTATAGGGCTCCTGAGGTGTTGCTTGGTTCCACTCATTATTCCATCGCTATCGAT ATGTGGTCTGTCGGTTGCATCTTTGCTGAAATGTCGAGAAGGCAAGCTCTGTTTCCTGGAGACTCCGAGCTTCAACAGTTGCTTCATATTTTCAGGTTGT TAGGAACACCAACTGAAGAGCAGTGGCCAGGAGTTACTTCTCTTAGAGATTGGCATGTCTATCCCAAATGGGAGCCTCAAAACCTTGCACGAGCTGTTCC ATCTCTTGGACCTCAAGGGGTGGACCTCTTATCGAAGATGCTCAAGTACGATCCAGCTGAAAGAATCTCGGCCAAAGCAGCTATGGATCATCCCTATTTC GACAGCCTTGACAAGTCGCAGTTCTGA
AA sequence Show only first row Show all	>Potri.016G142800.1 pacid=42809566 polypeptide=Potri.016G142800.1.p locus=Potri.016G142800 ID=Potri.016G142800.1.v4.1 annot-version=v4.1 MEKYEKLEKVGEGTYGKVYKAKDKLTGQLVALKKTRLQMDEEGVPPTALREVSLLQMLSQSLYVVRLLSVEHLDANNSDDDSKSNLYLVFEFLDADLKKF IDSHRKGPNPRPLSPSLIQSFLFQLCKGVAHCHSHGVLHRDLKPQNLLLDQERGILKIADLGLGRAFTVPLKSYTHEIVTLWYRAPEVLLGSTHYSIAID MWSVGCIFAEMSRRQALFPGDSELQQLLHIFRLLGTPTEEQWPGVTSLRDWHVYPKWEPQNLARAVPSLGPQGVDLLSKMLKYDPAERISAKAAMDHPYF DSLDKSQF

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G38620		CDKB1;2	cyclin-dependent kinase B1;2 (...		Potri.016G142800 [exp]	0	1	CDC2.2,CDC2.4
AT1G76310		CYCB2;4	CYCLIN B2;4 (.1)		Potri.009G165800 [exp]	1.73	0.9627
AT1G72670		IQD8	IQ-domain 8 (.1)		Potri.003G042700 [exp]	7.48	0.9617
AT1G44110		CYCA1;1	Cyclin A1;1 (.1)		Potri.002G080000 [exp]	7.93	0.9566
AT1G03780		AtTPX2, TPX2	targeting protein for XKLP2 (....		Potri.017G013100 [exp]	8.71	0.9553
AT2G34190			Xanthine/uracil permease famil...		Potri.011G068200 [exp]	8.83	0.9269
AT2G33560		BUBR1	BUB1-related (BUB1: budding un...		Potri.005G258300 [exp]	11.83	0.9520
AT3G19184	B3		AP2/B3-like transcriptional fa...		Potri.009G103300 [exp]	13.11	0.9083
AT1G61000			unknown protein		Potri.007G116200 [exp]	14.69	0.9153
AT1G76540		CDKB2;1	cyclin-dependent kinase B2;1 (...		Potri.002G003400 [exp]	16.43	0.9249	CDKB2.1
AT5G06150		CYC1BAT, CYCB1;...	cyclin B 1;2, Cyclin family pr...		Potri.016G033000 [exp]	17.54	0.9487

Compare expression of checked genes

Potri.016G142800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.