Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	APGM.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09780 927 / 0 iPGAM1 2,3-biphosphoglycerate-independent phosphoglycerate mutase 1, Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent (.1) AT3G08590 926 / 0 iPGAM2 2,3-biphosphoglycerate-independent phosphoglycerate mutase 2, Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G113300 [exp] 1030 / 0 AT3G08590 989 / 0.0 2,3-biphosphoglycerate-independent phosphoglycerate mutase 2, Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042283 [exp] 993 / 0 AT3G08590 993 / 0.0 2,3-biphosphoglycerate-independent phosphoglycerate mutase 2, Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent (.1.2) Lus10026370 [exp] 991 / 0 AT3G08590 992 / 0.0 2,3-biphosphoglycerate-independent phosphoglycerate mutase 2, Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent (.1.2) Lus10031309 [exp] 978 / 0 AT3G08590 977 / 0.0 2,3-biphosphoglycerate-independent phosphoglycerate mutase 2, Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent (.1.2) Lus10031877 [exp] 978 / 0 AT3G08590 979 / 0.0 2,3-biphosphoglycerate-independent phosphoglycerate mutase 2, Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0088 [poplar] [flax] Alk_phosphatase PF01676 [poplar] [flax] Metalloenzyme Metalloenzyme superfamily CL0088 [poplar] [flax] PF06415 [poplar] [flax] iPGM_N BPG-independent PGAM N-terminus (iPGM_N)
Representative CDS sequence Show only first row Show all	>Potri.016G142900.2 pacid=42810490 polypeptide=Potri.016G142900.2.p locus=Potri.016G142900 ID=Potri.016G142900.2.v4.1 annot-version=v4.1 ATGGGGAGCCCAGGACAGAACGCATGGAAATTGGCGGATCATCCTAAGCTTCCGAAGGGGAAGACTATTGCTATGGTGGTTTTGGATGGTTGGGGTGAGG CTAAACCTGATCAGTACAACTGCATCCACGTCGCCCACACTCCTACCATGGATTCCTTCAAAACTACTGCCCCTGAGAAATGGAGATTGATTAAGGCCCA TGGTACTGCTGTTGGGCTTCCAAGTGAGGATGACATGGGCAACAGTGAAGTTGGTCACAACGCTCTTGGTGCTGGTCGCATTTTTGCCCAAGGAGCCAAG CTTGTTGATCTTGCTCTTGCCTCGGGAAAAATCTACGACGGAGAGGGATTTAAGTACATTAAGGAATGTTTTGACAACGGCACCTTGCATCTCATCGGGT TATTGAGTGATGGTGGTGTTCACTCAAGGCTTGATCAGTTGCAGCTGTTGCTAAAAGGTGCTGTTGAAAATGGTGCAAAAAGAATCCGTGTTCACATTCT CACTGATGGCCGTGATGTTTTAGATGGGTCAAGCATTGGCTTTGTGGAGACTCTTGAGAAGGACCTGTCAAATTTACGTGAGAAAGGTATCGATGCACAA ATTGCATCTGGTGGTGGTCGCATGTATGTTACAATGGATCGTTATGAGAATGATTGGGATGTGGTGAAACGAGGATGGGATGCCCAAGTTCTTGGTGAAG CCCCATACAAGTTTAGAAATGCAGTAGAAGCTGTCAAGAAACTGAGGGAAGAACCCAAGGCAAATGACCAGTACTTACCTCCTTTTGTCATTGTTGATGA GAGTGGAAATCCTGTGGGACCAATCAAGGATGGTGATGCTGTTGTCACATTCAACTTCCGAGCAGATCGCATGGCTATGCTTGCTAAGGCGCTTGAATAC GAGGATTTTGACAAATTTGATCGGGTTCGAGTTCCTAAAATCCATTATGCTGGAATGCTTCAATATGATGGCGAGTTGAAGCTTCCAAGCCACTACCTTG TTTCTCCTCCTGAGATAGATAGGACATCTGGTGAATACTTGGTGCACAACGGCATTCGCACCTTTGCTTGCAGTGAGACTGTCAAATTTGGCCATGTCAC TTTCTTCTGGAATGGAAATCGTTCTGGTTATTTTAATCAAGAAATGGAGGAATATGTGGAAATTCCAAGTGATGTTGGAATTACCTTCAATGTCCAACCT AAGATGAAGGCAATAGAGATTGCTGAGAAGGCAAGGGATGCCATCCTTAGTGGCAAATTTGACCAGGTTCGTGTCAATCTACCAAATGGTGACATGGTGG GACATACAGGAGACATTGAGGCCACAGTCGTGGCATGCAAGGTTGCTGATGATGCTGTCAAGATGATCATTGATGCAATAGAGCAAGTTGGTGGAATCTT TGTAATCACTGCTGATCATGGTAATGCTGAAGACATGGTCAAGAGGGATAAGTCTGGCAAACCTCTTTTAGATAAGAATGGCAACCTTCAGATACTCACT TCCCACACTCTTCAACCAGTGCCTATCGCAATCGGAGGGCCTGGACTGGCCCCTGGTGCCAGGTTCCGCAATGATGTTCCCACTGGTGGACTTGCCAATG TGGCTGCAACCGTGATGAATCTGCATGGATTTGAGGCTCCTAGCGACTACGAGCCCACTCTGATTGAAGTTGTCGATAAATAG
AA sequence Show only first row Show all	>Potri.016G142900.2 pacid=42810490 polypeptide=Potri.016G142900.2.p locus=Potri.016G142900 ID=Potri.016G142900.2.v4.1 annot-version=v4.1 MGSPGQNAWKLADHPKLPKGKTIAMVVLDGWGEAKPDQYNCIHVAHTPTMDSFKTTAPEKWRLIKAHGTAVGLPSEDDMGNSEVGHNALGAGRIFAQGAK LVDLALASGKIYDGEGFKYIKECFDNGTLHLIGLLSDGGVHSRLDQLQLLLKGAVENGAKRIRVHILTDGRDVLDGSSIGFVETLEKDLSNLREKGIDAQ IASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPYKFRNAVEAVKKLREEPKANDQYLPPFVIVDESGNPVGPIKDGDAVVTFNFRADRMAMLAKALEY EDFDKFDRVRVPKIHYAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGIRTFACSETVKFGHVTFFWNGNRSGYFNQEMEEYVEIPSDVGITFNVQP KMKAIEIAEKARDAILSGKFDQVRVNLPNGDMVGHTGDIEATVVACKVADDAVKMIIDAIEQVGGIFVITADHGNAEDMVKRDKSGKPLLDKNGNLQILT SHTLQPVPIAIGGPGLAPGARFRNDVPTGGLANVAATVMNLHGFEAPSDYEPTLIEVVDK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G09780		iPGAM1	2,3-biphosphoglycerate-indepen...		Potri.016G142900 [exp]	0	1	APGM.2
AT3G06720		IMPA1, IMPA-1, ...	importin alpha isoform 1 (.1.2...		Potri.005G020400 [exp]	2.00	0.8324	ALPHA.10
AT5G18400			Cytokine-induced anti-apoptosi...		Potri.002G062200 [exp]	3.31	0.8160
AT3G60800			DHHC-type zinc finger family p...		Potri.002G147300 [exp]	3.46	0.8397
AT5G62580			ARM repeat superfamily protein...		Potri.012G074400 [exp]	3.74	0.8496
AT3G56740			Ubiquitin-associated (UBA) pro...		Potri.016G035800 [exp]	3.87	0.8597
AT4G10040		CYTC-2	cytochrome c-2 (.1)		Potri.013G101601 [exp]	5.47	0.8304
					Potri.001G400401 [exp]	5.91	0.8313
AT4G12340			copper ion binding (.1)		Potri.001G118700 [exp]	6.32	0.8247
AT2G39750			S-adenosyl-L-methionine-depend...		Potri.008G059500 [exp]	8.36	0.8174
AT2G41900	C3HZnF	OXS2	OXIDATIVE STRESS 2, CCCH-type ...		Potri.006G053800 [exp]	12.04	0.7889

Compare expression of checked genes

Potri.016G142900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.