Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38640 214 / 1e-70 Protein of unknown function (DUF567) (.1) AT5G41590 132 / 3e-38 Protein of unknown function (DUF567) (.1) AT3G15810 128 / 8e-37 Protein of unknown function (DUF567) (.1) AT1G80120 103 / 2e-27 Protein of unknown function (DUF567) (.1) AT1G53870 100 / 7e-26 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) AT1G53890 100 / 7e-26 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2), Protein of unknown function (DUF567) (.3) AT3G14260 86 / 2e-20 Protein of unknown function (DUF567) (.1) AT1G53880 89 / 3e-20 Eukaryotic translation initiation factor 2B (eIF-2B) family protein (.1) AT1G53900 89 / 3e-20 Eukaryotic translation initiation factor 2B (eIF-2B) family protein (.1) AT3G11740 74 / 2e-16 Protein of unknown function (DUF567) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G113400 [exp] 379 / 8e-136 AT2G38640 214 / 5e-71 Protein of unknown function (DUF567) (.1) Potri.001G098400 [exp] 142 / 3e-42 AT5G41590 201 / 3e-65 Protein of unknown function (DUF567) (.1) Potri.003G133200 [exp] 138 / 1e-40 AT5G41590 207 / 1e-67 Protein of unknown function (DUF567) (.1) Potri.001G192000 [exp] 129 / 1e-37 AT3G15810 281 / 5e-97 Protein of unknown function (DUF567) (.1) Potri.003G032500 [exp] 125 / 6e-36 AT3G15810 264 / 2e-90 Protein of unknown function (DUF567) (.1) Potri.006G067000 [exp] 111 / 2e-30 AT3G15810 229 / 1e-76 Protein of unknown function (DUF567) (.1) Potri.003G072200 [exp] 99 / 7e-26 AT3G14260 173 / 2e-54 Protein of unknown function (DUF567) (.1) Potri.001G106300 [exp] 94 / 1e-23 AT1G63410 132 / 8e-39 Protein of unknown function (DUF567) (.1) Potri.001G106400 [exp] 87 / 4e-21 AT1G63410 178 / 1e-56 Protein of unknown function (DUF567) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007423 [exp] 229 / 2e-76 AT2G38640 187 / 4e-60 Protein of unknown function (DUF567) (.1) Lus10010681 [exp] 226 / 3e-75 AT2G38640 184 / 6e-59 Protein of unknown function (DUF567) (.1) Lus10028756 [exp] 145 / 7e-43 AT5G41590 194 / 7e-62 Protein of unknown function (DUF567) (.1) Lus10017526 [exp] 143 / 4e-42 AT5G41590 194 / 4e-62 Protein of unknown function (DUF567) (.1) Lus10016666 [exp] 115 / 1e-31 AT3G15810 265 / 5e-90 Protein of unknown function (DUF567) (.1) Lus10032602 [exp] 101 / 4e-26 AT3G15810 211 / 5e-69 Protein of unknown function (DUF567) (.1) Lus10038097 [exp] 97 / 2e-24 AT3G15810 216 / 8e-71 Protein of unknown function (DUF567) (.1) Lus10007118 [exp] 75 / 9e-17 AT3G15810 191 / 4e-62 Protein of unknown function (DUF567) (.1) Lus10001484 [exp] 74 / 3e-16 AT3G14260 137 / 5e-40 Protein of unknown function (DUF567) (.1) Lus10008485 [exp] 72 / 3e-15 AT3G14260 132 / 4e-38 Protein of unknown function (DUF567) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0395 [poplar] [flax] Tubby_C PF04525 [poplar] [flax] LOR LURP-one-related
Representative CDS sequence Show only first row Show all	>Potri.016G143000.1 pacid=42809796 polypeptide=Potri.016G143000.1.p locus=Potri.016G143000 ID=Potri.016G143000.1.v4.1 annot-version=v4.1 ATGACAAAGGTATACCCCAACGTCGCTCCCACCACTACTAATAAGAAGCAGCAGCTGTTCAATCTCAAGCCCGCTAATAACGCCTTGGATGTAGATCATG CGGTTGTCCTAACCGTGTGGAAGAAGTCTTTGCTGTTCAATTGCCATGGCTTCACGGTCTATGACGGCAGGGGCAACCTTGTGTTTAGGGTTGACAACTA CATGGCCACTTCCGGTAATAATGGTGAGATCGTTCTCATGGATGCTGTTGGCAAGCCTCTCCTCACCATCCGTCGCAAGAGGTTGAGCCTTGGAGATAAC TGGCTAGTGTATGAAGGGGAAACAACCACCAACCCTCGGTTTTTGGTGAAGAAGCATGTTAACATCCTCAACACAAAGTGTTTGGCTCACGTTAGTCCGG CCTCAGGCAGTAACAAGAACGTTGTGTACGAGATAGAGGGATCGTATGCACAAAGATGTTGTGCCGTATACGATGAGAAGAAGAGAAGAGTGGCTGAGAT CAAGCAGAAAGAGTCGGTGGGTGGGGTGGCTTTTGGTGTTGACGTATTCCGCCTCATTGTTGGTCCAGAAATGGGAACCTCTATGGCCATGGCCATGGTC ATCCTCCTCGACCAGATGTTTGGCTCAACCAGACGATTCTCTACCTAA
AA sequence Show only first row Show all	>Potri.016G143000.1 pacid=42809796 polypeptide=Potri.016G143000.1.p locus=Potri.016G143000 ID=Potri.016G143000.1.v4.1 annot-version=v4.1 MTKVYPNVAPTTTNKKQQLFNLKPANNALDVDHAVVLTVWKKSLLFNCHGFTVYDGRGNLVFRVDNYMATSGNNGEIVLMDAVGKPLLTIRRKRLSLGDN WLVYEGETTTNPRFLVKKHVNILNTKCLAHVSPASGSNKNVVYEIEGSYAQRCCAVYDEKKRRVAEIKQKESVGGVAFGVDVFRLIVGPEMGTSMAMAMV ILLDQMFGSTRRFST

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G38640			Protein of unknown function (D...		Potri.016G143000 [exp]	0	1
AT3G48880			RNI-like superfamily protein (...		Potri.015G139700 [exp]	5.56	0.8014
AT5G26770			unknown protein		Potri.013G003400 [exp]	7.41	0.7496
AT3G55270		MKP1, ATMKP1	ARABIDOPSIS MITOGEN-ACTIVATED ...		Potri.008G049900 [exp]	10.29	0.7742	Pt-MKP1.2
AT4G13030			P-loop containing nucleoside t...		Potri.002G247400 [exp]	14.79	0.7700
AT5G64880			unknown protein		Potri.007G081700 [exp]	14.96	0.7042
AT5G10190			Major facilitator superfamily ...		Potri.007G091800 [exp]	16.73	0.7476
AT1G67920			unknown protein		Potri.015G034800 [exp]	18.70	0.6799
AT5G07610			F-box family protein (.1)		Potri.013G067800 [exp]	24.24	0.7556
AT2G36090			F-box family protein (.1)		Potri.006G208400 [exp]	27.85	0.7476
AT5G61790		CNX1, ATCNX1	calnexin 1 (.1)		Potri.001G070600 [exp]	30.98	0.7328

Compare expression of checked genes

Potri.016G143000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.