Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01020 655 / 0 Protein kinase superfamily protein (.1) AT2G05940 461 / 8e-161 RIPK RPM1-induced protein kinase, Protein kinase superfamily protein (.1) AT5G56460 453 / 2e-158 Protein kinase superfamily protein (.1) AT2G07180 452 / 2e-157 Protein kinase superfamily protein (.1.2) AT5G35580 442 / 9e-153 Protein kinase superfamily protein (.1) AT2G26290 438 / 3e-152 ARSK1 root-specific kinase 1 (.1) AT1G61590 431 / 3e-149 Protein kinase superfamily protein (.1) AT5G15080 424 / 7e-146 Protein kinase superfamily protein (.1) AT3G28690 414 / 2e-143 Protein kinase superfamily protein (.1.2.3) AT3G01300 417 / 6e-143 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G113600 [exp] 765 / 0 AT5G01020 664 / 0.0 Protein kinase superfamily protein (.1) Potri.006G141500 [exp] 458 / 1e-159 AT2G05940 638 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Potri.001G002300 [exp] 453 / 6e-159 AT5G56460 608 / 0.0 Protein kinase superfamily protein (.1) Potri.006G219300 [exp] 451 / 4e-157 AT2G05940 536 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Potri.001G128500 [exp] 448 / 3e-156 AT1G61590 622 / 0.0 Protein kinase superfamily protein (.1) Potri.006G066100 [exp] 444 / 2e-154 AT5G15080 503 / 6e-177 Protein kinase superfamily protein (.1) Potri.003G105400 [exp] 439 / 8e-153 AT1G61590 597 / 0.0 Protein kinase superfamily protein (.1) Potri.004G129000 [exp] 441 / 2e-152 AT5G15080 659 / 0.0 Protein kinase superfamily protein (.1) Potri.010G033800 [exp] 438 / 2e-151 AT5G15080 669 / 0.0 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036762 [exp] 671 / 0 AT5G01020 672 / 0.0 Protein kinase superfamily protein (.1) Lus10034897 [exp] 456 / 9e-158 AT2G05940 636 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Lus10033429 [exp] 452 / 3e-156 AT2G05940 636 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Lus10040588 [exp] 446 / 8e-155 AT2G07180 582 / 0.0 Protein kinase superfamily protein (.1.2) Lus10006643 [exp] 440 / 1e-152 AT5G15080 495 / 2e-173 Protein kinase superfamily protein (.1) Lus10038087 [exp] 439 / 3e-152 AT5G15080 499 / 6e-175 Protein kinase superfamily protein (.1) Lus10030668 [exp] 438 / 4e-151 AT5G15080 723 / 0.0 Protein kinase superfamily protein (.1) Lus10013406 [exp] 434 / 5e-151 AT5G56460 630 / 0.0 Protein kinase superfamily protein (.1) Lus10005255 [exp] 437 / 7e-151 AT5G15080 720 / 0.0 Protein kinase superfamily protein (.1) Lus10033294 [exp] 431 / 2e-150 AT1G61590 552 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.016G143200.1 pacid=42809614 polypeptide=Potri.016G143200.1.p locus=Potri.016G143200 ID=Potri.016G143200.1.v4.1 annot-version=v4.1 ATGGGCAACTGCGGCACTAGAGAAGAATCTGCTGTTGTCTCCACTGCTCAAGTTCAACAACAGCTTCACATACTGTCATCATCAACATCAATTAAAAACG GCCAGTCAGACAAGAAGCATACTAGGTCAATTTCAGATCTGAGTGATCCTACTTCAACTCCACGCAACTTTGAAGACTCAAGAAAGAATGCCCTTCTTTA TACCCATGTTATAGCCTTCACTTTGTATGAACTCGAGACTATTACCAAGAGCTTTCGCTCTGATTACATTCTTGGGGAAGGAGGGTTTGGAACGGTTTAT AAAGGCTACATTGATGAGAATGTCAGGGTTGGCCTCAAATCTATTCCAGTTGCTGTCAAGGTTCTAAATAGAGAGGGTCTTCAAGGCCACCGTGAATGGC TTACGGAAGTGAACTTTCTGGGGCAGCTAAGGCATCCTAATTTGGTGAAGTTGATTGGGTATTGTTGTGAGGATGATCACAGGTTGCTTGTTTATGAGTT TATGTTCCGAGGAAGCCTTGAGAATCATCTATTTCGAAAAGCAACAGTTCCATTATCTTGGGCCACAAGAATGATGATTGCTCTTGGAGCTGCTAAAGGG CTTGCTTTTCTTCACAATGCAGAAAGGCCAGTTATATATCGGGACTTCAAAACTTCCAATATATTACTGGACTCTGATTATACAGCCAAGCTCTCTGATT TCGGGCTTGCAAAAGCTGGACCCCAAGGCGATGAGACTCATGTATCAACTCGAGTGATGGGTACTTATGGTTATGCTGCTCCTGAATATGTAATGACTGG CCACCTGACTGCAAGAAGCGACGTATACAGTTTTGGAGTAGTTCTTCTGGAACTATTGACAGGAAGGAAGTCAGTTGACAAGACCAGACCCAGCAAGGAG CAGAGCTTGGTGGATTGGGCCCGTCCAAAATTGAATGACAAGAGAAAGTTGCTGCAAATAATTGACCCAAGACTGGAGAATCAGTACTCTGTAAGGGCAG CACAGAAAGCCTGCAGCCTGGCATACTACTGTCTGAGCCAGAATCCAAAGGCAAGGCCCCTGATGAGTGATGTAGTTGAAACTTTGGAACCTCTACAATG TAGCAATGATGGCGCCAATGGAGTTTCATCATCGTCACTGACCCCAACCCTAACAGGTAGTGCCAGTGCTTTTGCAATGGGCGGGGTCCCTGATTACCGG ATGCGGAGATTCACCAACAATGTTGTTCCTGGTTCTAGTTGTCGTTCTCCTAATCCAAATTGCTCTCCTGGTGGCCCTGCAGCGTGCAGGGTCAGATGA
AA sequence Show only first row Show all	>Potri.016G143200.1 pacid=42809614 polypeptide=Potri.016G143200.1.p locus=Potri.016G143200 ID=Potri.016G143200.1.v4.1 annot-version=v4.1 MGNCGTREESAVVSTAQVQQQLHILSSSTSIKNGQSDKKHTRSISDLSDPTSTPRNFEDSRKNALLYTHVIAFTLYELETITKSFRSDYILGEGGFGTVY KGYIDENVRVGLKSIPVAVKVLNREGLQGHREWLTEVNFLGQLRHPNLVKLIGYCCEDDHRLLVYEFMFRGSLENHLFRKATVPLSWATRMMIALGAAKG LAFLHNAERPVIYRDFKTSNILLDSDYTAKLSDFGLAKAGPQGDETHVSTRVMGTYGYAAPEYVMTGHLTARSDVYSFGVVLLELLTGRKSVDKTRPSKE QSLVDWARPKLNDKRKLLQIIDPRLENQYSVRAAQKACSLAYYCLSQNPKARPLMSDVVETLEPLQCSNDGANGVSSSSLTPTLTGSASAFAMGGVPDYR MRRFTNNVVPGSSCRSPNPNCSPGGPAACRVR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G01020			Protein kinase superfamily pro...		Potri.016G143200 [exp]	0	1
AT3G16300			Uncharacterised protein family...		Potri.003G050400 [exp]	3.60	0.8104
AT1G70370		PG2	polygalacturonase 2 (.1.2)		Potri.012G079200 [exp]	4.47	0.7821
AT5G11190	AP2_ERF	SHN2, SHN3	shine2, Integrase-type DNA-bin...		Potri.018G028000 [exp]	5.74	0.7942
AT3G28860		ABCB19, ATMDR11...	P-GLYCOPROTEIN 19, MULTIDRUG R...		Potri.017G081100 [exp]	6.78	0.7969
AT3G56370			Leucine-rich repeat protein ki...		Potri.019G058600 [exp]	14.38	0.7657
AT1G73620			Pathogenesis-related thaumatin...		Potri.012G047800 [exp]	14.83	0.7859
AT3G09730			unknown protein		Potri.006G130600 [exp]	16.88	0.7026
AT5G28150			Plant protein of unknown funct...		Potri.005G050900 [exp]	19.97	0.7718
AT3G49940	AS2	LBD38	LOB domain-containing protein ...		Potri.001G295700 [exp]	21.90	0.7751
AT1G31850			S-adenosyl-L-methionine-depend...		Potri.003G102400 [exp]	23.08	0.7630

Compare expression of checked genes

Potri.016G143200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.