Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38650 620 / 0 GAUT7, LGT7 LIKE GLYCOSYL TRANSFERASE 7, galacturonosyltransferase 7 (.1.2) AT5G47780 312 / 3e-98 GAUT4 galacturonosyltransferase 4 (.1) AT3G61130 310 / 9e-97 GAUT1, LGT1 galacturonosyltransferase 1 (.1) AT4G38270 278 / 2e-84 GAUT3 galacturonosyltransferase 3 (.1.2) AT2G30575 275 / 5e-84 GAUT5, LGT5 GALACTURONOSYLTRANSFERASE 5, los glycosyltransferase 5 (.1) AT1G06780 270 / 2e-82 GAUT6 galacturonosyltransferase 6 (.1.2) AT2G46480 251 / 7e-76 GAUT2, LGT2 galacturonosyltransferase 2 (.1) AT1G18580 212 / 3e-61 GAUT11 galacturonosyltransferase 11 (.1) AT2G20810 209 / 5e-60 GAUT10, LGT4 galacturonosyltransferase 10 (.1) AT3G25140 199 / 5e-56 QUA1, GAUT8 QUASIMODO 1, GALACTURONOSYLTRANSFERASE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G114300 [exp] 998 / 0 AT2G38650 626 / 0.0 LIKE GLYCOSYL TRANSFERASE 7, galacturonosyltransferase 7 (.1.2) Potri.016G001700 [exp] 319 / 3e-100 AT5G47780 885 / 0.0 galacturonosyltransferase 4 (.1) Potri.014G073800 [exp] 311 / 4e-97 AT3G61130 1011 / 0.0 galacturonosyltransferase 1 (.1) Potri.002G151400 [exp] 307 / 1e-95 AT3G61130 1017 / 0.0 galacturonosyltransferase 1 (.1) Potri.004G206000 [exp] 285 / 3e-87 AT4G38270 881 / 0.0 galacturonosyltransferase 3 (.1.2) Potri.006G001100 [exp] 279 / 1e-85 AT5G47780 776 / 0.0 galacturonosyltransferase 4 (.1) Potri.005G218900 [exp] 255 / 1e-76 AT1G06780 690 / 0.0 galacturonosyltransferase 6 (.1.2) Potri.015G060800 [exp] 221 / 2e-64 AT1G18580 850 / 0.0 galacturonosyltransferase 11 (.1) Potri.012G064500 [exp] 214 / 4e-62 AT1G18580 846 / 0.0 galacturonosyltransferase 11 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035615 [exp] 674 / 0 AT2G38650 658 / 0.0 LIKE GLYCOSYL TRANSFERASE 7, galacturonosyltransferase 7 (.1.2) Lus10003235 [exp] 643 / 0 AT2G38650 617 / 0.0 LIKE GLYCOSYL TRANSFERASE 7, galacturonosyltransferase 7 (.1.2) Lus10038739 [exp] 320 / 2e-100 AT5G47780 904 / 0.0 galacturonosyltransferase 4 (.1) Lus10009311 [exp] 300 / 8e-93 AT3G61130 1018 / 0.0 galacturonosyltransferase 1 (.1) Lus10041389 [exp] 290 / 1e-89 AT3G61130 1020 / 0.0 galacturonosyltransferase 1 (.1) Lus10036540 [exp] 290 / 3e-88 AT3G61130 1015 / 0.0 galacturonosyltransferase 1 (.1) Lus10026546 [exp] 285 / 2e-84 AT4G38270 899 / 0.0 galacturonosyltransferase 3 (.1.2) Lus10024859 [exp] 254 / 1e-76 AT1G06780 630 / 0.0 galacturonosyltransferase 6 (.1.2) Lus10013832 [exp] 265 / 3e-76 AT2G17140 1034 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10018773 [exp] 253 / 5e-76 AT1G06780 639 / 0.0 galacturonosyltransferase 6 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF01501 [poplar] [flax] Glyco_transf_8 Glycosyl transferase family 8
Representative CDS sequence Show only first row Show all	>Potri.016G143966.1 pacid=42809915 polypeptide=Potri.016G143966.1.p locus=Potri.016G143966 ID=Potri.016G143966.1.v4.1 annot-version=v4.1 ATGAAAGGCTATCATAATAATCACAATCAAGGGAAAAGGCGATGGAGATGTCTGGTAATAGGAGTGCTATTTCTGGTGCTGCTTTCAATGCTCGTTCCTC TCGTCTTTTTGCTCGGCCTTTACCACAACGGCTTCCACTCCACCGGACATCTCTCTGATCGACAAACTTCTTCTGCTTCTGCTACAGACCAGTCAAGCCA CATAAAGGAACTTATCAACAACTTTGCACCAACTCTTCCTAAGATTCATCAAGATTTAGTTATAAACTTTACAAGTGGAGCAGAAAATAAGACCGCAAGT TCAGGTACTCCTGTGGTGCTTCCTGTTGTACCTCAACCACCTCCCATTAGAAATGATGCTGCAGCTGCTGGTACAGATGAAATCACAAAGCATAAAAGAA ATGCAGTTGAGGAAAGTGAAAAATGTGAGCTCAGATTTGGAGGCTATTGCCATTGGCGTGACGAGCATAGAGAAAATATGAAGGATTTTATGGTGAAGAA ATTAAAAGACCAACTTTTTGTGGCTAGAGCATATTATCCTAGCATTGCAAAGCTTCCATCTCAAGAGAAGTTAACTCATGAACTGAAACAAAATATTCAA GAACTGGAGCGAATTCTTAGTGAAAGTTCAACAGATGCTGATCTTCCACCACAAATTCAGAAGAAATTACAGAAGATGGAAAATGTGATATCTAAAGCTA AAACATTCCCTGTGGATTGTAATAACGTTGACAAGAAATTGAGGCAGATACTTGATCTAACCGAGGAAGAAACTAATTTTCACATGAAGCAGAGTGCTTT CCTTTATCAACTTGCAGTGCAGACCATGCCAAAGGGTTTACACTGTCTCTCTATGAGACTGATTGTGGAATATTTTAAATCTTCTGCACATGATAAGGAG TTCCCTCTGTCTGAGAGATATTCAGATCCATCATTGCAACACTATGTTGTATTCTCCACAAATGTACTTGCTGCTTCAGTTGTAATCAACTCCACTGCTG TGCATGCAAGAGAAAGTGGGAATCTGGTTTTTCATGTTCTGACAGATGGACTGAATTATTATGCAATGAAACTATGGTTCCTTAGAAATACTTACAAGGA AGCTGCTGTCCAAGTTTTGAACATTGAAAATGTTACCCTGAAATATTATGATAAGGAGGTTCTGAAAAGCATGTCCCTGCCAGTGGAGTATCGTGTTTCT TTCCAAACTGTTACTAATCCACCAGCATCTCATTTAAGAACGGAATATGTATCTGTTTTTTCCCATACTCACTATCTTCTTCCTTATATATTTGAGAAGT TGAAGAGAGTTGTGGTTCTGGATGATGATGTTGTTGTCCAGCGGGACTTGTCTGACCTGTGGAACCTTAACATGGGAAGGAAAGTGAATGGTGCTTTACA ATTATGTTCGGTGCAGTTGGGTCAGCTTAGAAGTTATCTGGGAAAAAGCATTTTTGATAAAACTTCTTGTGCTTGGATGTCTGGATTGAATGTAATTGAT CTGGTCAGGTGGAGAGAGCTAGATCTTACTAAAACTTATTGGAAGCTGGGACAAGAGGTTAGCAAGGGAACAGAGTCAGATGAATCTGTTGCATTGAGCA CAAGCTTGCTTACCTTTCAAGACCTAGTTTATCCGCTTGATGGTGCATGGGCTTTGTCTGGACTGGGTCATGACTATGGGATTGATGTCCAAGCCATTAA GAAGGCTTCCGTGTTGCACTTTAATGGACAAATGAAACCTTGGCTTGAGTTAGGAATCCCAAAGTATAAACATTATTGGAAGAGGTTTCTAAACCGACAT GATCAATTATTGGTGGAGTGCAATGTGAATCCATAA
AA sequence Show only first row Show all	>Potri.016G143966.1 pacid=42809915 polypeptide=Potri.016G143966.1.p locus=Potri.016G143966 ID=Potri.016G143966.1.v4.1 annot-version=v4.1 MKGYHNNHNQGKRRWRCLVIGVLFLVLLSMLVPLVFLLGLYHNGFHSTGHLSDRQTSSASATDQSSHIKELINNFAPTLPKIHQDLVINFTSGAENKTAS SGTPVVLPVVPQPPPIRNDAAAAGTDEITKHKRNAVEESEKCELRFGGYCHWRDEHRENMKDFMVKKLKDQLFVARAYYPSIAKLPSQEKLTHELKQNIQ ELERILSESSTDADLPPQIQKKLQKMENVISKAKTFPVDCNNVDKKLRQILDLTEEETNFHMKQSAFLYQLAVQTMPKGLHCLSMRLIVEYFKSSAHDKE FPLSERYSDPSLQHYVVFSTNVLAASVVINSTAVHARESGNLVFHVLTDGLNYYAMKLWFLRNTYKEAAVQVLNIENVTLKYYDKEVLKSMSLPVEYRVS FQTVTNPPASHLRTEYVSVFSHTHYLLPYIFEKLKRVVVLDDDVVVQRDLSDLWNLNMGRKVNGALQLCSVQLGQLRSYLGKSIFDKTSCAWMSGLNVID LVRWRELDLTKTYWKLGQEVSKGTESDESVALSTSLLTFQDLVYPLDGAWALSGLGHDYGIDVQAIKKASVLHFNGQMKPWLELGIPKYKHYWKRFLNRH DQLLVECNVNP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G38650		GAUT7, LGT7	LIKE GLYCOSYL TRANSFERASE 7, g...		Potri.016G143966 [exp]	0	1
AT5G56510		APUM12	pumilio 12 (.1)		Potri.003G222300 [exp]	5.09	0.9044
AT1G17720		ATBBETA, ATB BE...	Protein phosphatase 2A, regula...		Potri.018G055001 [exp]	7.48	0.8622
AT1G54920			unknown protein		Potri.013G023600 [exp]	10.24	0.8419
AT1G79830		GC5	golgin candidate 5 (.1.2.3.4)		Potri.003G052100 [exp]	13.07	0.8787
AT5G08160		ATPK3	serine/threonine protein kinas...		Potri.015G055200 [exp]	18.02	0.8473
AT3G58640			Mitogen activated protein kina...		Potri.002G214400 [exp]	22.97	0.7493
AT2G21410		VHA-A2	vacuolar proton ATPase A2 (.1)		Potri.005G234100 [exp]	35.66	0.8356
AT5G25510			Protein phosphatase 2A regulat...		Potri.018G034200 [exp]	38.96	0.8421
AT1G01950		AtKINUb, ARK2	Arabidopsis thaliana KINESIN U...		Potri.002G149400 [exp]	46.73	0.7982
AT1G77140		ATVPS45, VPS45	vacuolar protein sorting 45 (....		Potri.002G071600 [exp]	47.54	0.8253	Pt-VPS45.2

Compare expression of checked genes

Potri.016G143966 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.