Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79620 1380 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G49760 894 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G49770 831 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G49780 713 / 0 Leucine-rich repeat protein kinase family protein (.1) AT1G06840 493 / 3e-159 Leucine-rich repeat protein kinase family protein (.1) AT5G01950 461 / 7e-147 Leucine-rich repeat protein kinase family protein (.1) AT3G53590 378 / 3e-117 Leucine-rich repeat protein kinase family protein (.1) AT5G65700 339 / 7e-101 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) AT3G49670 330 / 1e-97 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1) AT5G49750 310 / 5e-95 Leucine-rich repeat (LRR) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G114400 [exp] 1584 / 0 AT1G79620 1295 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G231700 [exp] 956 / 0 AT5G49760 1031 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G232400 [exp] 954 / 0 AT5G49760 1013 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G231850 [exp] 879 / 0 AT5G49760 914 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G232500 [exp] 877 / 0 AT5G49760 873 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G231500 [exp] 818 / 0 AT5G49760 800 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G231600 [exp] 803 / 0 AT5G49760 763 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G232301 [exp] 793 / 0 AT5G49760 750 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G231300 [exp] 759 / 0 AT5G49760 719 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012159 [exp] 932 / 0 AT5G49760 1058 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10007587 [exp] 829 / 0 AT5G49760 956 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10023849 [exp] 729 / 0 AT1G79620 751 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10021003 [exp] 560 / 0 AT1G79620 549 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10019114 [exp] 471 / 2e-150 AT1G06840 1288 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10023848 [exp] 448 / 5e-149 AT1G79620 431 / 5e-143 Leucine-rich repeat protein kinase family protein (.1) Lus10035605 [exp] 467 / 9e-149 AT5G01950 1126 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10034445 [exp] 463 / 2e-147 AT1G06840 1274 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10003244 [exp] 455 / 1e-144 AT5G01950 1039 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10004061 [exp] 385 / 2e-118 AT5G01950 766 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0016 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.016G144100.1 pacid=42808894 polypeptide=Potri.016G144100.1.p locus=Potri.016G144100 ID=Potri.016G144100.1.v4.1 annot-version=v4.1 ATGGGACTGGGCGGAGGCACTGCCCGGTTGCTCTTCCTTCTTACTTTCTTTACTTCAGGAATTCATCTCATTTTCTCTGACACGGACCCAAGTGATGCTG CAGCACTCCAATCCCTCAAGAAGCAATGGCAAAATACACCACCAAGTTGGGGGCAGTCTCATGATCCATGCGGAGCACCCTGGGAAGGAGTCACGTGCTC CAATTCAAGGATCACTGCATTGGGGTTATCAACCATGAACCTCAAAGGGAAGCTAAGCGGTGATATTGGAGGACTCACCGAATTGAGATCCTTGGACCTA TCATTTAACACAAACCTCACAGGATCCCTCACTCCTCGGTTTGGAGATCTGCTAAAATTGAACATCCTAATCCTTGCTGGTTGTGGCTTCAGCGGTAGTA TTCCAGATGAGCTGGGCAATCTTGCTGAGCTATCCTTCTTGGCTCTCAACTCAAACAACTTCTCTGGTGGAATCCCTCCTTCTCTAGGTAAACTCTCCAA ACTCTACTGGCTGGACCTTGCAGACAATCAATTGACAGGACCTATCCCAATCTCCAAAAACACCACCCCAGGCTTGGACCTACTACTAAATGCTAAGCAC TTCCATTTCAATAAAAACCAGCTTTCAGGTTCCATTCCACCTGAACTTTTCAGCTCTGATATGGTGCTGATACACGTATTGTTCGATGGGAACCAACTTG AAGGAAATATTCCTTCCACATTAGGCCTAGTTCAGACTCTCGAGGTTCTTCGACTTGATAGAAATGCTTTATCTGGCAAGGTCCCAAAAAATTTGAACAA CCTCTCGAGCCTCAATGAACTGAATCTAGCACACAATAAGCTGATAGGCCCTTTACCAAATTTAACAAAAATGGACGCCCTCAATTATGTGGATCTTAGC AACAATTCTTTCTATTCTTCAGAAGCTCCTGATTGGTTCTCAACCTTACCATCTCTCACCACCTTAGTTATAGAACATGGATCGCTTCATGGGACTTTGC CATCAAAAGTGTTCAGTTTTCCCCAGATACAGCAAGTGTTATTGAGGAATAATGCACTCAATGGCTCCTTCAACATGGGTGACAGCATTAGTACACAGCT TCAACTTGTTGATCTTCAGAACAATCAGATTTCCTCTGTAACACTGACGGCTGATTACACAAACACATTAATACTTGTAGGAAACCCGGTGTGCACTGCT CTCTCGGATACCAATTACTGTCAGCTCCAACAGCAGTCTACAAAGCCTTATTCCACTAGCCTAGCTAATTGTGGCAGTAAAATGTGTCCCCCTGAACAGA AGCTGAGCCCTCAGAGTTGCGAATGTGCCTATCCATATGAAGGGACCCTGTACTTCAGAGCACCCTCCTTCCGGGAATTGTCCAATGTGAATATGTTTCA CTCACTAGAAATGTCTCTTTGGGGCAAACTGGGCCTAACTCCTGGTTCCGTTTTTCTTCAGAACCCTTTTTTTAATGTTGACGACTACCTTCAGGTGCAG GTCGCACTATTTCCACCCACTGACAAATATTTTAATAGGTCTGAAATTCAGAGTATTGGATTTGACTTGACCAACCAAACCTACAAGCCTCCCAAAGATT TTGGACCCTACTATTTTATTGCCTCGCCTTATCCTTTTCCAGATGCTTCCAGAGGAAGTTCTATGAGCACTGGTGTTGTTGTTGGGATAGGGATTGGCTG TGGCTTACTGGTTATGAGCCTTGTTGGAGTAGGGATTTATGCCATTCGTCAGAAGAAACGTGCAGAAAAAGCCATTGGATTGAGTAAACCATTTGCTTCT TGGGCTCCAAGTGGCAAAGATAGTGGCGGGGTACCTCAGTTAAAGGGAGCAAGATGGTTCTCATATGAAGAACTAAAAAGGTGCACTTACAACTTTACAG AAAGCAATGAGATAGGTTCTGGAGGCTATGGCAAGGTGTATAGAGGAATGCTTTCTGATGGCCAAGTAGTGGCAATCAAAAGAGCTCAGCAAGGATCAAT GCAGGGCGGGCTCGAGTTCAAGACTGAAATTGAGTTGCTATCACGAGTTCATCACAAAAACCTTGTTGGTCTTGTGGGTTTTTGTTTTGAACAAGGAGAA CAGATGCTAGTTTATGAATATATGCCTAATGGAACACTGCGGGAATGCTTGTCAGGGAAGTCTGGCATTTATCTTGACTGGAGAAGGAGACTTCGCATTG CTCTTGGGTCGGCTAGAGGATTAGCTTACTTACACGAGCTTGCAAATCCTCCTATAATCCACAGAGATGTCAAGTCCACCAACATTCTGTTGGATGAAAA TTTAACAGCAAAGGTCGCTGACTTTGGCCTGTCAAAGCTGGTATCAGACAGCTCGAAAGGACATGTTTCAACCCAGGTTAAAGGAACCCTGGGTTATCTG GATCCTGAATATTACATGACACAACAATTAACAGAGAAGAGCGATGTGTACAGTTTTGGGGTGGTCATGCTTGAGCTGATAGCAGCTAAGCAACCTATAG AGAAAGGGAAGTACATTGTGCGGGAAGTAAGAATGGCAATGGACAGGAATGATGAAGAGCACTATGGATTGAAAGAAATAATGGATCCAGGCCTTAGAAA CATGGGAGGGAATCTGGTAGGATTTGGGAGATTTTTGGAAGTGGCAATGCAGTGTGTTGAAGAGTCAGCAACAGAGCGTCCAACAATGAGTGAGGTGGTG AAGGCAATAGAAATGATATTGCAAAATGATGGGGTGAACACAAACTCAACAACATCAGCATCTTCTTCAGCAACAGACTTTGGAGCTTCAAGAGGCGGTG GTCCCCTTAGACATCCTTACAATCATGATGTTGTAGCTGCCAAGAATAAGGTGGATGTTGTCGACAATATTAATAATAACAATGCCTTTGATTATAGTGG TGGCTACACTCTCTCAGCAAAAGTTGAACCCAAGTAG
AA sequence Show only first row Show all	>Potri.016G144100.1 pacid=42808894 polypeptide=Potri.016G144100.1.p locus=Potri.016G144100 ID=Potri.016G144100.1.v4.1 annot-version=v4.1 MGLGGGTARLLFLLTFFTSGIHLIFSDTDPSDAAALQSLKKQWQNTPPSWGQSHDPCGAPWEGVTCSNSRITALGLSTMNLKGKLSGDIGGLTELRSLDL SFNTNLTGSLTPRFGDLLKLNILILAGCGFSGSIPDELGNLAELSFLALNSNNFSGGIPPSLGKLSKLYWLDLADNQLTGPIPISKNTTPGLDLLLNAKH FHFNKNQLSGSIPPELFSSDMVLIHVLFDGNQLEGNIPSTLGLVQTLEVLRLDRNALSGKVPKNLNNLSSLNELNLAHNKLIGPLPNLTKMDALNYVDLS NNSFYSSEAPDWFSTLPSLTTLVIEHGSLHGTLPSKVFSFPQIQQVLLRNNALNGSFNMGDSISTQLQLVDLQNNQISSVTLTADYTNTLILVGNPVCTA LSDTNYCQLQQQSTKPYSTSLANCGSKMCPPEQKLSPQSCECAYPYEGTLYFRAPSFRELSNVNMFHSLEMSLWGKLGLTPGSVFLQNPFFNVDDYLQVQ VALFPPTDKYFNRSEIQSIGFDLTNQTYKPPKDFGPYYFIASPYPFPDASRGSSMSTGVVVGIGIGCGLLVMSLVGVGIYAIRQKKRAEKAIGLSKPFAS WAPSGKDSGGVPQLKGARWFSYEELKRCTYNFTESNEIGSGGYGKVYRGMLSDGQVVAIKRAQQGSMQGGLEFKTEIELLSRVHHKNLVGLVGFCFEQGE QMLVYEYMPNGTLRECLSGKSGIYLDWRRRLRIALGSARGLAYLHELANPPIIHRDVKSTNILLDENLTAKVADFGLSKLVSDSSKGHVSTQVKGTLGYL DPEYYMTQQLTEKSDVYSFGVVMLELIAAKQPIEKGKYIVREVRMAMDRNDEEHYGLKEIMDPGLRNMGGNLVGFGRFLEVAMQCVEESATERPTMSEVV KAIEMILQNDGVNTNSTTSASSSATDFGASRGGGPLRHPYNHDVVAAKNKVDVVDNINNNNAFDYSGGYTLSAKVEPK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G79620			Leucine-rich repeat protein ki...		Potri.016G144100 [exp]	0	1
AT4G18640		MRH1	morphogenesis of root hair 1, ...		Potri.004G058100 [exp]	1.00	0.9111
AT2G35110		NAPP, GRL, NAP1	NCK-ASSOCIATED PROTEIN 1, GNAR...		Potri.015G123900 [exp]	4.00	0.8880
AT1G76620			Protein of unknown function, D...		Potri.002G001900 [exp]	4.58	0.8383
AT1G68795		CLE12	CLAVATA3/ESR-RELATED 12 (.1)		Potri.010G130400 [exp]	5.38	0.8332	CLE12.1
AT1G12260	NAC	ANAC007, VND4, ...	VASCULAR RELATED NAC-DOMAIN PR...		Potri.015G127400 [exp]	6.78	0.8377
AT5G37478			TPX2 (targeting protein for Xk...		Potri.017G144061 [exp]	9.05	0.8911
AT1G16860			Ubiquitin-specific protease fa...		Potri.008G006100 [exp]	11.22	0.8645
AT5G18410		ATSRA1, KLK, PI...	PIROGI 121, PIROGI, KLUNKER, t...		Potri.013G051200 [exp]	12.36	0.8435
AT3G44820			Phototropic-responsive NPH3 fa...		Potri.009G150500 [exp]	14.83	0.8391
AT2G20650			RING/U-box superfamily protein...		Potri.007G139300 [exp]	15.29	0.8352

Compare expression of checked genes

Potri.016G144100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.