Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G33400 700 / 0 TPR9 tetratricopeptide repeat 9, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G30480 66 / 2e-11 TPR1, AtTPR1 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) AT2G42810 66 / 8e-11 AtPP5, PP5.2, PP5, PAPP5 Arabidopsis thaliana protein phosphatase 5, protein phosphatase 5.2 (.1.2) AT3G58620 66 / 1e-10 TTL4 tetratricopetide-repeat thioredoxin-like 4 (.1) AT2G42580 63 / 6e-10 VIT, TTL3 VHI-INTERACTING TPR CONTAINING PROTEIN, tetratricopetide-repeat thioredoxin-like 3 (.1) AT1G53300 62 / 1e-09 TTL1 tetratricopetide-repeat thioredoxin-like 1 (.1) AT3G17970 61 / 2e-09 ATTOC64-III translocon at the outer membrane of chloroplasts 64-III (.1) AT4G12400 58 / 2e-08 Hop3 Hop3, stress-inducible protein, putative (.1.2) AT4G08320 57 / 3e-08 TPR8 tetratricopeptide repeat 8, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT4G22670 56 / 6e-08 ATHIP1, TPR11 tetratricopeptide repeat 11, HSP70-interacting protein 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G178900 [exp] 71 / 5e-13 AT4G30480 275 / 1e-92 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Potri.014G141800 [exp] 67 / 4e-11 AT2G42810 895 / 0.0 Arabidopsis thaliana protein phosphatase 5, protein phosphatase 5.2 (.1.2) Potri.015G038600 [exp] 67 / 4e-11 AT3G17970 747 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Potri.011G111500 [exp] 67 / 4e-11 AT1G53300 707 / 0.0 tetratricopetide-repeat thioredoxin-like 1 (.1) Potri.012G046900 [exp] 66 / 6e-11 AT3G17970 744 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Potri.018G100700 [exp] 64 / 6e-11 AT4G30480 303 / 8e-104 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Potri.003G113400 [exp] 66 / 8e-11 AT4G12400 830 / 0.0 Hop3, stress-inducible protein, putative (.1.2) Potri.005G177400 [exp] 63 / 3e-10 AT4G08320 406 / 1e-139 tetratricopeptide repeat 8, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.001G205300 [exp] 62 / 8e-10 AT5G09420 724 / 0.0 outer membrane 64, ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-V, translocon at the outer membrane of chloroplasts 64-V (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026202 [exp] 805 / 0 AT1G33400 655 / 0.0 tetratricopeptide repeat 9, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10042464 [exp] 477 / 3e-161 AT1G33400 374 / 1e-121 tetratricopeptide repeat 9, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10042854 [exp] 70 / 6e-12 AT1G53300 749 / 0.0 tetratricopetide-repeat thioredoxin-like 1 (.1) Lus10028154 [exp] 70 / 6e-12 AT1G53300 754 / 0.0 tetratricopetide-repeat thioredoxin-like 1 (.1) Lus10018004 [exp] 68 / 2e-11 AT3G17970 711 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Lus10042001 [exp] 66 / 7e-11 AT3G17970 714 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Lus10035117 [exp] 62 / 2e-10 AT4G30480 291 / 3e-99 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Lus10006559 [exp] 62 / 1e-09 AT3G04710 581 / 0.0 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) Lus10029712 [exp] 61 / 2e-09 AT2G17900 615 / 0.0 ASH1-related 1, SET domain group 37 (.1) Lus10003260 [exp] 61 / 2e-09 AT3G04710 587 / 0.0 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF00515 [poplar] [flax] TPR_1 Tetratricopeptide repeat CL0020 [poplar] [flax] TPR PF13414 [poplar] [flax] TPR_11 TPR repeat
Representative CDS sequence Show only first row Show all	>Potri.016G144200.1 pacid=42810670 polypeptide=Potri.016G144200.1.p locus=Potri.016G144200 ID=Potri.016G144200.1.v4.1 annot-version=v4.1 ATGGAGAAGTTGAAATGTTTAGTTCCGGAGAGTATAAAGCGGATGGTGGGAGAAAGCAGTGATGAAGATCTTGCGTCCACGTCTTCTACTCTACTTCACT GCCTCCTTAACTTGCCCCAGTTTCAACAAATGATTGATGATTTGGCGGATTCAAATAATAGTCTCTGTGGAAAGAACAAGAAAGTCGCTTTGGAATTGAA GCAAAAAGGAAATGAATCTTATTTAACAGCAGAGTACGCCTCTGCTTTGGAATCCTATTCCCAGGCACTCCGTGTTGCTCCAATGGATGCTGTTGATATG GACAAAAATCTGGTTGCCACCTTATTTCTCAACCGGGCTTCTTTATTTCATAAAATAGGTTTTCTTACCGAGTCTCTACGGGATTGCAAGCGCGCGATTC AAATTTCCCCAACATATGCCAAGGCATGGTATAGGAGGGGCAAAGCAAATGTTGATTTAGGAAATTTTAAAGATGCTGTCAACGACTTCAACAATGCTAA AAGTTTTGAGTTGTCATTGGATGGAAAGAGGCACATAGAAACTGAATTAAACATAATCCTAGAAAGACAGAAAAGCACAAGCAGGATGGCAGTTCAGGAG AATGAGAACTGCTTTGGACATTTTGATGAGCCGTGCCAATTAAAACTATCACAAGTTTCAACACCAGATAAGGGAAGGGGCATGGCTTCACAATGTGACA TTCCCCAAGCATCCTTGGTTCACAAGGAAGAACCTTATGCATTGATCATATTGAAGAGTTGCCGGGAAACACACTGTCATTACTGCTTGAATCAACTACG AGCAGATACAGTCCCCTGTACGTCATGTACAATACCACTTTACTGCTCCGAACATTGCCAGATACAAGCTGGAGGAGAACCATTCAGTAATTTTCAGGAC AAAATTGGAACCAAGGAAAGTCACTCCCATAGCCATGGAGAGTATAAGTTTGCTTTATGCAGTGATTCCAATCCAATTGAGTGCTTTCCTGAACACAAAC ATGAATGTCTAGGTGTAAACTGGCCTGCCATATTGCCATCTGATATAGTTCTGGCTGGTCGAATTCTAGTGAAATCTACCTCGCAAAGATGTTCTACCGA GTCTAATGCTCTTTGTGATCTGGGTCTCTCTCACAGCTATACACAGATTACTCCAGAAAGCAAATTGGAGCTACATATGTACGCAATTGTATTGTTATGC TGTCTGCAGCATTCTTTCGGCTTTGAACTTCCAATTAATGGAGTCTCTTTATCACAGACTATCATCCTTATATCTCAAATCAGGGTGAACTCTATGGCAA TTGTCCGAATGAAATCTGTTGATGACCCACCAGATCAGTTCAGAAAGCTTACCTCTGTTGGAGATGCTTTAACTAGTAGTTTGGAACAGGTTCCCGTGGG TCAAGCTATATATAAAGCTGCCAGTTTGTTCAACCATTCTTGCTTGCCAAACATTCATGCATATTTTCTTTCGCGTACTCTGTTTATACGAACAACAGAG TATGTGTCAACAGGTTGTCCCCTGGAGTTGTCCTACGGTCCTCAGGTTGGGCAATCGGACTGTGAAGACCGCCTTAGGTATCTGGCAGATAAGTACTCAT TTCGATGCCAGTGCCATGGTTGTTCACAATTAAATCTATCTGACCTCGTTCTTAATGCCTTTTGCTGTGTTAATCATAACTGTGCCGGTGTAGTCCTGGA GAGCACCATCATAAACGGAGAAACACGCGAACTTAATAACTTTCCTAGAGCTCCTGAAAAACAGAAATTTGATTCTCACTTGCAGGGTCACAAGCTCAAT ATTGTAGATATAAACGATGTGGCAAGCCTTGCTCTCAAGTTTAACAATAGCTCCCTTCATATTCAACCTGGATTTTGTTTGCATTGTGGCACACATCGTG ATCTGGACGCTTCGCATGAAGCCATCAACAAAGCTTGGAGTTATATCAAGAGGTTGCAGGAAGCAATCATTTCAAAAGATATCTCAGGAACCACCCTTTT AGATGCTTCAAGGGCCCTTGGTATTTTGAGATCAACCTTGCATGCATATAACAAGAGTGTTGCAGAGGCTGAGGACAATCTTGCACAAGCATTTTGTTTG GTTAGAGACTTCCAATCTGCTAGGGAACACTGTAAAGAATCAATCAAGATACTCCAAACACTCTATGATCCTGATCACATTGTCATTGGATATGAACTGG TCAAGCTTGCAAGCATTCAGCTATCCTTGGATGACCCTGCAGCTGTGGACAGCACAAACCATCTGGGCTTGATATTTGCGCGGTATTTTGGACCGCATGT AGACTTTATTGTCCCATATCAGCAGTTCCTGAAAAGAGTAGCTCACCGGTAG
AA sequence Show only first row Show all	>Potri.016G144200.1 pacid=42810670 polypeptide=Potri.016G144200.1.p locus=Potri.016G144200 ID=Potri.016G144200.1.v4.1 annot-version=v4.1 MEKLKCLVPESIKRMVGESSDEDLASTSSTLLHCLLNLPQFQQMIDDLADSNNSLCGKNKKVALELKQKGNESYLTAEYASALESYSQALRVAPMDAVDM DKNLVATLFLNRASLFHKIGFLTESLRDCKRAIQISPTYAKAWYRRGKANVDLGNFKDAVNDFNNAKSFELSLDGKRHIETELNIILERQKSTSRMAVQE NENCFGHFDEPCQLKLSQVSTPDKGRGMASQCDIPQASLVHKEEPYALIILKSCRETHCHYCLNQLRADTVPCTSCTIPLYCSEHCQIQAGGEPFSNFQD KIGTKESHSHSHGEYKFALCSDSNPIECFPEHKHECLGVNWPAILPSDIVLAGRILVKSTSQRCSTESNALCDLGLSHSYTQITPESKLELHMYAIVLLC CLQHSFGFELPINGVSLSQTIILISQIRVNSMAIVRMKSVDDPPDQFRKLTSVGDALTSSLEQVPVGQAIYKAASLFNHSCLPNIHAYFLSRTLFIRTTE YVSTGCPLELSYGPQVGQSDCEDRLRYLADKYSFRCQCHGCSQLNLSDLVLNAFCCVNHNCAGVVLESTIINGETRELNNFPRAPEKQKFDSHLQGHKLN IVDINDVASLALKFNNSSLHIQPGFCLHCGTHRDLDASHEAINKAWSYIKRLQEAIISKDISGTTLLDASRALGILRSTLHAYNKSVAEAEDNLAQAFCL VRDFQSAREHCKESIKILQTLYDPDHIVIGYELVKLASIQLSLDDPAAVDSTNHLGLIFARYFGPHVDFIVPYQQFLKRVAHR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G33400		TPR9	tetratricopeptide repeat 9, Te...		Potri.016G144200 [exp]	0	1
AT4G38760			Protein of unknown function (D...		Potri.009G130000 [exp]	8.18	0.8117
AT5G45030			Trypsin family protein (.1.2)		Potri.015G121400 [exp]	8.36	0.7755
AT1G19100			Histidine kinase-, DNA gyrase ...		Potri.015G079400 [exp]	10.95	0.7835
AT1G24706		EMB2793, AtTHO2	EMBRYO DEFECTIVE 2793, THO2 (....		Potri.013G085000 [exp]	12.80	0.8071
AT2G36490		DML1, ROS1	REPRESSOR OF SILENCING1, demet...		Potri.006G116000 [exp]	13.71	0.7911
AT1G02080			transcription regulators (.1.2...		Potri.002G143000 [exp]	15.96	0.7926
AT3G23780		NRPE2, DMS2, DR...	DEFECTIVE IN MERISTEM SILENCIN...		Potri.018G019100 [exp]	17.49	0.7543
AT5G54520			Transducin/WD40 repeat-like su...		Potri.001G410500 [exp]	18.38	0.7461
AT3G54230		SUA	suppressor of abi3-5 (.1.2)		Potri.004G081800 [exp]	24.37	0.7832
AT2G29200		APUM1	pumilio 1 (.1)		Potri.008G058300 [exp]	24.91	0.7716

Compare expression of checked genes

Potri.016G144200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.