Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10860 340 / 2e-120 CBSX3 CBS domain containing protein 3, Cystathionine beta-synthase (CBS) family protein (.1) AT1G47271 186 / 8e-60 Cystathionine beta-synthase (CBS) family protein (.1) AT3G52950 57 / 2e-09 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1), CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.2) AT2G36500 55 / 7e-09 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1) AT5G63490 55 / 8e-09 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1) AT5G50530 52 / 6e-08 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1) AT5G50640 52 / 6e-08 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1) AT1G69800 40 / 0.0008 Cystathionine beta-synthase (CBS) protein (.1), Cystathionine beta-synthase (CBS) protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G161500 [exp] 376 / 1e-134 AT5G10860 343 / 8e-122 CBS domain containing protein 3, Cystathionine beta-synthase (CBS) family protein (.1) Potri.005G228300 [exp] 227 / 4e-76 AT1G47271 251 / 1e-85 Cystathionine beta-synthase (CBS) family protein (.1) Potri.002G034800 [exp] 97 / 5e-26 AT1G47271 102 / 4e-28 Cystathionine beta-synthase (CBS) family protein (.1) Potri.005G070500 [exp] 56 / 3e-09 AT3G52950 750 / 0.0 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1), CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.2) Potri.007G098400 [exp] 50 / 2e-07 AT3G52950 728 / 0.0 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1), CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.2) Potri.012G099600 [exp] 49 / 7e-07 AT5G50530 639 / 0.0 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1) Potri.015G098100 [exp] 49 / 1e-06 AT5G50530 628 / 0.0 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1) Potri.001G303900 [exp] 44 / 3e-05 AT4G34120 267 / 1e-90 LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 1, CYSTATHIONE [BETA]-SYNTHASE DOMAIN-CONTAINING PROTEIN 1, CBS domain containing protein 2, Cystathionine beta-synthase (CBS) family protein (.1) Potri.009G099200 [exp] 41 / 0.0002 AT4G34120 266 / 1e-90 LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 1, CYSTATHIONE [BETA]-SYNTHASE DOMAIN-CONTAINING PROTEIN 1, CBS domain containing protein 2, Cystathionine beta-synthase (CBS) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019117 [exp] 335 / 2e-118 AT5G10860 347 / 2e-123 CBS domain containing protein 3, Cystathionine beta-synthase (CBS) family protein (.1) Lus10034441 [exp] 338 / 7e-116 AT5G10860 350 / 4e-120 CBS domain containing protein 3, Cystathionine beta-synthase (CBS) family protein (.1) Lus10035014 [exp] 317 / 2e-111 AT5G10860 341 / 5e-121 CBS domain containing protein 3, Cystathionine beta-synthase (CBS) family protein (.1) Lus10021675 [exp] 317 / 3e-111 AT5G10860 338 / 7e-120 CBS domain containing protein 3, Cystathionine beta-synthase (CBS) family protein (.1) Lus10001964 [exp] 187 / 9e-60 AT1G47271 202 / 5e-66 Cystathionine beta-synthase (CBS) family protein (.1) Lus10035965 [exp] 50 / 4e-07 AT3G52950 714 / 0.0 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1), CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.2) Lus10043123 [exp] 49 / 7e-07 AT5G50530 714 / 0.0 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1) Lus10025698 [exp] 49 / 7e-07 AT3G52950 728 / 0.0 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1), CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.2) Lus10032625 [exp] 49 / 7e-07 AT5G50530 721 / 0.0 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1) Lus10002834 [exp] 44 / 2e-05 AT4G34120 260 / 2e-87 LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 1, CYSTATHIONE [BETA]-SYNTHASE DOMAIN-CONTAINING PROTEIN 1, CBS domain containing protein 2, Cystathionine beta-synthase (CBS) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00571 [poplar] [flax] CBS CBS domain
Representative CDS sequence Show only first row Show all	>Potri.017G000100.1 pacid=42812892 polypeptide=Potri.017G000100.1.p locus=Potri.017G000100 ID=Potri.017G000100.1.v4.1 annot-version=v4.1 ATGCAAGGCGCACTTCGCACGTTTTTAACCCATGGAAATGTTGTCAAGGATTCACTCTTCCAACATCTCCGTGTTTCGAGTCCAGTCTTGCGGCCCGTTG TGTTTTCTCGTTTCGAATCAGTCTCCTCTGCTCCTATTGAGGAGACTGGCTTCGAGAGCACCACAATTGCTGACATCCTCAAAGAAAAAGGTAAAAATGC GGATGGTTCATGGCTTTGGTGCACTACGGATGACACTGTTTATGATGCTGTCAAGTCGATGACACATCACAACGTTGGGGCCTTGGTGGTTGTCAAACAT GGTGAGCAGGAATCAATTGCAGGAATCATCACAGAGAGGGACTATCTGCGGAAGATAATTGTGCAGGGAAGATCGTCCAAGTCAACCAAGGTTGGGGATA TCATGACTGAAGAGAACAAGCTTATTACGGTCACGCATGATACCAAAGTTCTGAAGGCAATGCAATTAATGACAGATAGACGCATTAGGCACATTCCTGT GATTGATGATAAGGGAATGATTGGCATGGTATCTATTGGAGATGTTGTTCGCGCCGTGGTGAGTGAGTACAGGGAGGAGCTGGACCGTCTGAATGCATAC ATACAAGGAGGTTATTGA
AA sequence Show only first row Show all	>Potri.017G000100.1 pacid=42812892 polypeptide=Potri.017G000100.1.p locus=Potri.017G000100 ID=Potri.017G000100.1.v4.1 annot-version=v4.1 MQGALRTFLTHGNVVKDSLFQHLRVSSPVLRPVVFSRFESVSSAPIEETGFESTTIADILKEKGKNADGSWLWCTTDDTVYDAVKSMTHHNVGALVVVKH GEQESIAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVTHDTKVLKAMQLMTDRRIRHIPVIDDKGMIGMVSIGDVVRAVVSEYREELDRLNAY IQGGY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G10860		CBSX3	CBS domain containing protein ...		Potri.017G000100 [exp]	0	1
AT5G06080	AS2	LBD33	LOB domain-containing protein ...		Potri.010G200400 [exp]	4.24	0.6889	LBD33.1
AT4G37300		MEE59	maternal effect embryo arrest ...		Potri.007G049800 [exp]	4.47	0.6780
AT3G44110		ATJ3	DNAJ homologue 3 (.1.2)		Potri.010G243100 [exp]	5.29	0.6810	Pt-SGJ3.2
AT4G36470			S-adenosyl-L-methionine-depend...		Potri.007G021400 [exp]	7.93	0.6344
AT1G08290	C2H2ZnF	WIP3	WIP domain protein 3 (.1)		Potri.009G143700 [exp]	8.24	0.6464
AT2G28070		ABCG3	ATP-binding cassette G3, ABC-2...		Potri.004G214000 [exp]	9.32	0.6817
AT2G03890		UBDKGAMMA7, ATP...	UBIQUITIN-LIKE DOMAIN KINASE G...		Potri.008G112200 [exp]	10.95	0.6744
AT2G17020			F-box/RNI-like superfamily pro...		Potri.009G139500 [exp]	12.40	0.6695
AT4G18710		DWF12, UCU1, BI...	ULTRACURVATA 1, DWARF 12, BRAS...		Potri.004G059000 [exp]	13.26	0.6659	GSK1.2
AT1G14720		ATXTH28, EXGT-A...	xyloglucan endotransglycosylas...		Potri.010G102300 [exp]	13.49	0.6554	Pt-EXGT.3

Compare expression of checked genes

Potri.017G000100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.