Plant FIBer expression Database

Pt-MTHFR1.1,MTHFR2 (Potri.017G000300) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol Pt-MTHFR1.1,MTHFR2
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G44160 1038 / 0 MTHFR2 methylenetetrahydrofolate reductase 2 (.1)
AT3G59970 1021 / 0 MTHFR1 methylenetetrahydrofolate reductase 1 (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G147300
[exp]
1168 / 0 AT2G44160 1048 / 0.0 methylenetetrahydrofolate reductase 2 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10027078
[exp]
1060 / 0 AT3G59970 1037 / 0.0 methylenetetrahydrofolate reductase 1 (.1.2.3)
Lus10025610
[exp]
1057 / 0 AT3G59970 1035 / 0.0 methylenetetrahydrofolate reductase 1 (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0086 FAD_oxidored PF02219 MTHFR Methylenetetrahydrofolate reductase
Representative CDS sequence
>Potri.017G000300.1 pacid=42813166 polypeptide=Potri.017G000301.1.p locus=Potri.017G000300 ID=Potri.017G000300.1.v4.1 annot-version=v4.1
ATGAAGGTTATTGATAAGATAAGGGCGGCAGCAGCAGCAGGAGATTCAAATGGAGGAGATAGCAGCAGCAATAATAAGGTTGTTTTCTCCTTCGAATTCT
TTCCTCCAAAGACCGATGATGGAGTGGACAACCTGTTCGAGAGAATGGACAGGATGGTCTCTCACAATCCTTCCTTCTGTGACATCACTTGGGGTGCTGG
TGGCTCCACCGCAGATCTGACCTTAGACATCGCCAACAAGATGCAGAACATCATCTGTGTCGAGACTATGATGCATCTCACCTGCACCAACATGCCCGTT
GAGAAGATCGATCACGCCCTCGAAACCATCAAATCCAATGGAATCCAGAATGTTCTTGCTCTTCGTGGTGATCCTCCTCACGGTCAGGATAAATTCGTCC
AGATCCAAGGCGGCCTCGCTTGCGCTCTCGACCTCGTCAAACATATCAGATCCAAATATGGTGATTACTTCGGCATTACTGTCGCTGGCTATCCAGAGGC
ACATCCTGATGTGATTGGAAGTGATGGATTTGCTACGCTTGAGGATTACCATAAAGATCTTGCTTATTTGAAGCAGAAGGTGGATGCTGGGGCTGATCTA
ATTGTTACTCAACTCTTTTATGATACTGATATTTTCTTGAAATTTGTGAATGACTGCCGCCAAATCGGAATCAATTGTCCCATTGTCCCTGGTATTATGC
CTATTAATAACTACAAGGGCTTCATACGTATGGCTGGTTTTTGCAAAACCAAGATACCAGCCGAGGTTACTGCGGCATTGGAGCCTATCAAGGATAATGA
AGAAGCCGTCAGAGCCTATGGGATTCACCTTGGAACTGAAATGTGCAAGAAGATTTTAGCTCATGGAATCAAGACGTTGCATCTTTATACTCTGAACATG
GAGAAATCTGCTTTAGCTATATTAATGAATCTTGGTTTGATTGAAGAGTCCAAGATTACAAGGCCGTTACCATGGCGCCCCCCGACAAATGTTTTCCGTG
TAAAAGAAGATGTCCGTCCGATATTTTGGGCTAATCGTCCAAAGAGCTACCTAACAAGGACAATAGGTTGGGACCAGTACCCTCATGGCCGATGGGGTGA
TTCTCGCAATCCATCCTATGGTGCTTTATCTGACTATCAGTTTATGCGACCCCGGGCACGTGGCAAGAAACTTCTTGAAGAGTGGGCTGCCCCCTTGAAA
AGTGTTGAGGATATATACGAGAAATTCAAGGTATACTGCCTTGGGAAGTTGAAAAGTAGTCCTTGGTCAGAACTAGATGGCCTTCAGCCAGAGACTAAAA
TCATTAATGAACAGCTGGGTAAGATCAACTTGAAGGGATTCCTGACTATCAATAGTCAACCAGCTGTCAATGGGGAAAAATCTGATTCTCCATCTGTTGG
TTGGGGTGGGCCAGGAGGGTATGTATATCAGAAGGCTTATCTAGAATTTTTCTGCTCCAAGGACAAGCTGAATGCTCTTGTTGACAAGTGCAAGTCTTTC
CCTTTTGTAACTTACATTGCTGTGAACAAAGGAGGGAGTTGGATCTCTAACGTTGCCCTGACTGATGTGAATGCTGTAACCTGGGGAGTCTTCCCAGGAA
AGGAGATTATCCAACCAACTGTTGTGGATCCCACTAGCTTCAGTGTGTGGAAGGATGAGGCATTTGAAATCTGGTCAAGAGGATGGGCTTCCTTGTACCC
AGAGGGTGACCCATCCAGAACGCTACTTGAAGAGGTGCAGAGCAGCTACTTTTTGGTCAGCTTGGTAGATAATGATTACATCCATGGGGACATTTTTGCT
GTCTTCGCGGATTTATGA
AA sequence
>Potri.017G000300.1 pacid=42813166 polypeptide=Potri.017G000301.1.p locus=Potri.017G000300 ID=Potri.017G000300.1.v4.1 annot-version=v4.1
MKVIDKIRAAAAAGDSNGGDSSSNNKVVFSFEFFPPKTDDGVDNLFERMDRMVSHNPSFCDITWGAGGSTADLTLDIANKMQNIICVETMMHLTCTNMPV
EKIDHALETIKSNGIQNVLALRGDPPHGQDKFVQIQGGLACALDLVKHIRSKYGDYFGITVAGYPEAHPDVIGSDGFATLEDYHKDLAYLKQKVDAGADL
IVTQLFYDTDIFLKFVNDCRQIGINCPIVPGIMPINNYKGFIRMAGFCKTKIPAEVTAALEPIKDNEEAVRAYGIHLGTEMCKKILAHGIKTLHLYTLNM
EKSALAILMNLGLIEESKITRPLPWRPPTNVFRVKEDVRPIFWANRPKSYLTRTIGWDQYPHGRWGDSRNPSYGALSDYQFMRPRARGKKLLEEWAAPLK
SVEDIYEKFKVYCLGKLKSSPWSELDGLQPETKIINEQLGKINLKGFLTINSQPAVNGEKSDSPSVGWGGPGGYVYQKAYLEFFCSKDKLNALVDKCKSF
PFVTYIAVNKGGSWISNVALTDVNAVTWGVFPGKEIIQPTVVDPTSFSVWKDEAFEIWSRGWASLYPEGDPSRTLLEEVQSSYFLVSLVDNDYIHGDIFA
VFADL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G44160 MTHFR2 methylenetetrahydrofolate redu... Potri.017G000300
[exp]
0 1 Pt-MTHFR1.1,MTHFR2
AT5G17920 ATCIMS, ATMETS,... methionine synthesis 1, COBALA... Potri.019G038268
[exp]
2.00 0.9708
AT5G18500 Protein kinase superfamily pro... Potri.010G001600
[exp]
2.82 0.9278
AT5G17920 ATCIMS, ATMETS,... methionine synthesis 1, COBALA... Potri.009G152800
[exp]
3.46 0.9561
AT4G13940 MEE58, EMB1395,... MATERNAL EFFECT EMBRYO ARREST ... Potri.017G059400
[exp]
3.87 0.9457 Pt-SAHH.2
AT4G13930 SHM4 serine hydroxymethyltransferas... Potri.001G320400
[exp]
6.00 0.9322
AT5G47870 RAD52-2B, RAD52... radiation sensitive 51-2, unkn... Potri.001G072300
[exp]
9.16 0.9158
AT2G41760 unknown protein Potri.006G051500
[exp]
9.94 0.9194
AT5G11890 EMB3135 EMBRYO DEFECTIVE 3135, unknown... Potri.018G052500
[exp]
10.39 0.9234
AT2G05940 RIPK RPM1-induced protein kinase, P... Potri.003G066300
[exp]
12.36 0.9045
AT2G35120 Single hybrid motif superfamil... Potri.012G123700
[exp]
13.03 0.9232 gdcH1

Potri.017G000300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.