Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44150 471 / 3e-167 SDG7, ASHH3 SET DOMAIN-CONTAINING PROTEIN 7, histone-lysine N-methyltransferase ASHH3 (.1) AT3G59960 359 / 3e-123 SDG24, ASHH4 SET DOMAIN PROTEIN 24, histone-lysine N-methyltransferase ASHH4 (.1) AT4G30860 216 / 2e-65 SDG4, ASHR3 ASH1-related 3, SET domain group 4 (.1) AT1G77300 149 / 2e-39 ASHH2, CCR1, SDG8, EFS, LAZ2 LAZARUS 2, CAROTENOID CHLOROPLAST REGULATORY1, ASH1 HOMOLOG 2, histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.1), histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.2) AT1G76710 126 / 3e-32 ASHH1 ,SDG26 ASH1-RELATED PROTEIN 1, ASH1 RELATED PROTEIN 1, SET domain group 26 (.1.2) AT5G42400 89 / 5e-19 SDG25, ATXR7 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) AT2G23740 87 / 3e-18 C2H2ZnF AtCZS nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding (.1.2) AT4G27910 86 / 4e-18 SDG16, ATX4 SET domain protein 16 (.1) AT2G31650 83 / 5e-17 SDG27, TRX1, ATX1 SET DOMAIN PROTEIN 27, homologue of trithorax (.1) AT1G05830 81 / 2e-16 SDG30, ATX2 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G147200 [exp] 698 / 0 AT2G44150 477 / 2e-169 SET DOMAIN-CONTAINING PROTEIN 7, histone-lysine N-methyltransferase ASHH3 (.1) Potri.018G102100 [exp] 209 / 6e-63 AT4G30860 585 / 0.0 ASH1-related 3, SET domain group 4 (.1) Potri.005G182100 [exp] 145 / 4e-38 AT1G77300 807 / 0.0 LAZARUS 2, CAROTENOID CHLOROPLAST REGULATORY1, ASH1 HOMOLOG 2, histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.1), histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.2) Potri.002G079100 [exp] 140 / 5e-36 AT1G77300 820 / 0.0 LAZARUS 2, CAROTENOID CHLOROPLAST REGULATORY1, ASH1 HOMOLOG 2, histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.1), histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.2) Potri.005G195400 [exp] 136 / 1e-35 AT1G76710 657 / 0.0 ASH1-RELATED PROTEIN 1, ASH1 RELATED PROTEIN 1, SET domain group 26 (.1.2) Potri.007G033000 [exp] 95 / 7e-21 AT2G23740 1436 / 0.0 nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding (.1.2) Potri.005G260100 [exp] 91 / 1e-19 AT5G42400 397 / 5e-117 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) Potri.002G001000 [exp] 91 / 2e-19 AT5G42400 385 / 3e-112 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) Potri.005G129800 [exp] 91 / 2e-19 AT2G23740 1468 / 0.0 nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039118 [exp] 508 / 0 AT2G44150 434 / 1e-152 SET DOMAIN-CONTAINING PROTEIN 7, histone-lysine N-methyltransferase ASHH3 (.1) Lus10038740 [exp] 473 / 4e-166 AT2G44150 399 / 5e-137 SET DOMAIN-CONTAINING PROTEIN 7, histone-lysine N-methyltransferase ASHH3 (.1) Lus10003777 [exp] 194 / 2e-56 AT4G30860 451 / 9e-154 ASH1-related 3, SET domain group 4 (.1) Lus10016600 [exp] 146 / 3e-39 AT1G76710 600 / 0.0 ASH1-RELATED PROTEIN 1, ASH1 RELATED PROTEIN 1, SET domain group 26 (.1.2) Lus10000967 [exp] 144 / 2e-37 AT1G77300 748 / 0.0 LAZARUS 2, CAROTENOID CHLOROPLAST REGULATORY1, ASH1 HOMOLOG 2, histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.1), histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.2) Lus10028662 [exp] 144 / 2e-37 AT1G77300 774 / 0.0 LAZARUS 2, CAROTENOID CHLOROPLAST REGULATORY1, ASH1 HOMOLOG 2, histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.1), histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.2) Lus10022483 [exp] 95 / 9e-21 AT2G23740 1070 / 0.0 nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding (.1.2) Lus10004012 [exp] 93 / 3e-20 AT3G61740 424 / 2e-136 SET domain protein 14 (.1.2) Lus10010121 [exp] 93 / 4e-20 AT3G61740 1008 / 0.0 SET domain protein 14 (.1.2) Lus10016788 [exp] 92 / 5e-20 AT2G23740 1325 / 0.0 nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00856 [poplar] [flax] SET SET domain
Representative CDS sequence Show only first row Show all	>Potri.017G000400.4 pacid=42814415 polypeptide=Potri.017G000400.4.p locus=Potri.017G000400 ID=Potri.017G000400.4.v4.1 annot-version=v4.1 ATGCTACTGGAAGCCATGCCTGCTGCGAAGAAGAACCTTGATCAACGAATCACCCTTGCATTCAACAAGTTGCTGAAGGAGATAGGAAATCAAGTTGAGT TTGAGCTTCCCGATGCATTTAATAAATCAAAGTCTACAGCCTACACACTCATAAAGCGCAATATATATCTCACCAAGAAGATTAAAAGGCGCCTTGAGGA CGATGGCATATTCTGCTCCTGCAGTGCATCACTGGGTTCCTCTCGTGTGTGTGATAGAGATTGCCATTGTGGGATGCTGCTGTCTAGCTGCTCTTCAGGC TGCAAATGTGGGAGTTCATGCAGCAACAAACCATTCCAGCACCGACCACTGAAGAAGATGAAATTAGTGCAGACCGAGAAATGTGGATCTGGAATTGTGG CAGATGAAGATATTAAACAAGGAGAGTTTGTAATAGAGTATGTTGGAGAAGTTATTGATGATAACACATGTGAGGAAAGGCTTTGGAAAATGAAACACCG TGGGGAAACAAACTTTTACTTGTGTGAAATCAATCGCAATATGGTAATTGATGCTACTTACAAGGGAAACAAGTCAAGATATATAAACCACAGTTGTTCT CCTAATACCGAGATGCAGAAATGGATAATTGATGGCGAGACAAGAATTGGCATATTTGCAACACATGACATAAGAAAGGGCGAGCATCTGACATATGATT ATCAGTTTGTCCAATTTGGTGCAGATCAAGATTGCCACTGTGGTGCCTCAGGCTGCAGGAAAAAGCTAGGGGTTAAACCGAGCAAGCCTAAAATGTCTTC AGATGCTGCATTAAAACTAGTAGCATGCCAGGTGGCTGTATCCTCTCCCAAACTGAAAGCAATGCTGTCTGCAAAAGATGTTTACCAGAATGGAGGTTTG CACATAGGGAGTTCGCAACATGCTTTCAGTAGTCTACCAACATACTCCTGTAATTGCATTGGCGAAGTGGTTAGACTATGTAGTCGCACTGATCAGATAT ATTTTGGGATTATTAAACAGTATGATGAGTATTCAAGAAAACACTCGATCATGTTTGAAGATGGCACTGTTAAATTTCTTGACATGTCGAAAGAAGATTG GGAATTCGTAACTTTGTGA
AA sequence Show only first row Show all	>Potri.017G000400.4 pacid=42814415 polypeptide=Potri.017G000400.4.p locus=Potri.017G000400 ID=Potri.017G000400.4.v4.1 annot-version=v4.1 MLLEAMPAAKKNLDQRITLAFNKLLKEIGNQVEFELPDAFNKSKSTAYTLIKRNIYLTKKIKRRLEDDGIFCSCSASLGSSRVCDRDCHCGMLLSSCSSG CKCGSSCSNKPFQHRPLKKMKLVQTEKCGSGIVADEDIKQGEFVIEYVGEVIDDNTCEERLWKMKHRGETNFYLCEINRNMVIDATYKGNKSRYINHSCS PNTEMQKWIIDGETRIGIFATHDIRKGEHLTYDYQFVQFGADQDCHCGASGCRKKLGVKPSKPKMSSDAALKLVACQVAVSSPKLKAMLSAKDVYQNGGL HIGSSQHAFSSLPTYSCNCIGEVVRLCSRTDQIYFGIIKQYDEYSRKHSIMFEDGTVKFLDMSKEDWEFVTL

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G44150		SDG7, ASHH3	SET DOMAIN-CONTAINING PROTEIN ...		Potri.017G000400 [exp]	0	1
AT3G30380			alpha/beta-Hydrolases superfam...		Potri.010G136900 [exp]	1.73	0.7536
AT5G41070		DRB5	dsRNA-binding protein 5 (.1)		Potri.017G063700 [exp]	3.87	0.7556
AT4G36930	bHLH	SPT, bHLH024	SPATULA, basic helix-loop-heli...		Potri.002G124400 [exp]	5.91	0.7469	Pt-ALC.1
AT2G39810		HOS1	HIGH EXPRESSION OF OSMOTICALLY...		Potri.003G079700 [exp]	12.96	0.7440
AT2G01630			O-Glycosyl hydrolases family 1...		Potri.010G108500 [exp]	17.23	0.7085
AT3G63300		FKD1	FORKED 1 (.1.2)		Potri.005G213800 [exp]	17.43	0.7545
AT4G34440		AtPERK5	proline-rich extensin-like rec...		Potri.004G153600 [exp]	19.07	0.7167
AT1G25500			Plasma-membrane choline transp...		Potri.008G118200 [exp]	19.59	0.7275
AT3G21100			RNA-binding (RRM/RBD/RNP motif...		Potri.001G255400 [exp]	25.13	0.7438
AT5G16690		ORC3, ATORC3	origin recognition complex sub...		Potri.013G077200 [exp]	28.61	0.7218

Compare expression of checked genes

Potri.017G000400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.