Plant FIBer expression Database

Potri.017G000500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G44140 523 / 0 Peptidase family C54 protein (.1.2)
AT3G59950 505 / 4e-177 Peptidase family C54 protein (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G147100
[exp]
813 / 0 AT2G44140 534 / 0.0 Peptidase family C54 protein (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10027079
[exp]
587 / 0 AT2G44140 552 / 0.0 Peptidase family C54 protein (.1.2)
Lus10025609
[exp]
577 / 0 AT2G44140 547 / 0.0 Peptidase family C54 protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0125 Peptidase_CA PF03416 Peptidase_C54 Peptidase family C54
Representative CDS sequence
>Potri.017G000500.1 pacid=42814416 polypeptide=Potri.017G000500.1.p locus=Potri.017G000500 ID=Potri.017G000500.1.v4.1 annot-version=v4.1
ATGAAGGGTTTTCGTGAAAGGGGGTTTGTTGCTTCTTCCAAATCTTCATCTACAGCTGAATCCCCACATAGATCTTTCACTTCTGATTCTTCAGAACTGG
GGTCCGCCGACACCAAGTTTTCCAAGCCTTCTTTATGGTCAACCTTCTTTGCATCAGCTTTCTCTGTCTTTGATACACATTGCGATTCATCTTCAACTAG
TGAAAAAAAAGCACCTCATATTAGACATGGTAATGGTTGGACGTCAGCTGTGAAGAAAATTGTGGCAGGTGGCTCAATGAGGAGGATCCAAGAGTGTGTA
TTAGGGACAAGCAAGACAGGGATTTCTAACACAACTGGTGACATTTGGCTCCTAGGAGCATGCTACAAGATTTCACAAGATAATTCTTCTGGGGATGCTG
CTGCTACCAATGCTTTAGCTGCCTTTAATCATGATTTTTCTTCACGAATTCTTATCACATATAGAAAAGGGTTTGATGCTATTGAAGATTCAAAACTTAC
CAGTGATGTAAGCTGGGGTTGTATGCTTCGGAGTAGTCAGATGCTTGTTGCTCAGGCATTGCTTTTTCATCGATTAGGGAGATCTTGGAGAAAACCATTG
GACAAGCCATTGGATCGAGAATATGTTGAGATTTTACATCTTTTTGGTGATTCGGAGTCATCGGCTTTCTCTATTCATAATCTTCTTCGGGCTGGAAAGG
CTTATGGCCTTGCAGCTGGGTCATGGGTAGGCCCTTATGCAGTGTGCCACTCTTGGGAATCTCTAGTCCGCTCTAGAAGAGAGGAAACCAATCTTGAATA
CCAGTCACTTTCAATGGCTGTTTATGTTGTTTCTGGTTCTGAAGATGGGGAGCGAGGGGGGGCTCCAGTTCTCTGCATTGAAGAAGCCGCTAGACATTGT
TCAGAGTTTTCTAAAGGTCAAGAAGATTGGACGCCAATTCTTCTATTGGTTCCTTTGGTTCTTGGGCTTGATAAAATAAATCCAAGGTATATTCCGTCCC
TGCAAGCAACATTCACCTTTCCCCAAAGCCTTGGAATTTTGGGTGGGAAACCTGGTGCTTCAACATATATTGTTGGTGTGCAAGATGAGAATGCTTTTTA
TCTTGATCCACATGAAGTTCAGCCGGTGGTCAATGTTAGCAGAGATGATGTAGAGGCCAATACTTCATCTTACCACTGCAATGTTGTGCGGCACATGCCT
CTGGACTTGATTGATCCATCCTTGGCAATTGGATTTTATTGTCGAGACAAAGATGATTTTGATGATTTCTGTACGCTGGCATCCAAGCTGACAGACGAAT
CAAATGGTGCACCTTTGTTTACAGTGGCTCATTCCCGTAAATTATTAAAGCATGATAGTGGCGAGGTTCGGTCGGATGATTCCCTTGGTGTGATGACTAT
GAATGATGTAGAGGGCTGTGTACACGAGGATGACTGGCAACTCCTTTAA
AA sequence
>Potri.017G000500.1 pacid=42814416 polypeptide=Potri.017G000500.1.p locus=Potri.017G000500 ID=Potri.017G000500.1.v4.1 annot-version=v4.1
MKGFRERGFVASSKSSSTAESPHRSFTSDSSELGSADTKFSKPSLWSTFFASAFSVFDTHCDSSSTSEKKAPHIRHGNGWTSAVKKIVAGGSMRRIQECV
LGTSKTGISNTTGDIWLLGACYKISQDNSSGDAAATNALAAFNHDFSSRILITYRKGFDAIEDSKLTSDVSWGCMLRSSQMLVAQALLFHRLGRSWRKPL
DKPLDREYVEILHLFGDSESSAFSIHNLLRAGKAYGLAAGSWVGPYAVCHSWESLVRSRREETNLEYQSLSMAVYVVSGSEDGERGGAPVLCIEEAARHC
SEFSKGQEDWTPILLLVPLVLGLDKINPRYIPSLQATFTFPQSLGILGGKPGASTYIVGVQDENAFYLDPHEVQPVVNVSRDDVEANTSSYHCNVVRHMP
LDLIDPSLAIGFYCRDKDDFDDFCTLASKLTDESNGAPLFTVAHSRKLLKHDSGEVRSDDSLGVMTMNDVEGCVHEDDWQLL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G44140 Peptidase family C54 protein (... Potri.017G000500
[exp]
0 1
AT3G26020 Protein phosphatase 2A regulat... Potri.010G054300
[exp]
3.16 0.6712
AT2G36960 MYB TKI1 TSL-kinase interacting protein... Potri.016G091700
[exp]
5.47 0.6468 Pt-TKI1.1
AT4G16520 ATG8F autophagy 8f, Ubiquitin-like s... Potri.014G060300
[exp]
11.22 0.6695
AT5G22950 VPS24.1 SNF7 family protein (.1) Potri.004G215500
[exp]
19.39 0.6260
AT1G01910 P-loop containing nucleoside t... Potri.014G078100
[exp]
19.49 0.6479
AT4G16530 Family of unknown function (DU... Potri.001G123200
[exp]
21.97 0.6556
AT2G31570 ATGPX2 glutathione peroxidase 2 (.1) Potri.007G126600
[exp]
24.71 0.6103
AT2G44710 RNA-binding (RRM/RBD/RNP motif... Potri.002G139700
[exp]
29.18 0.6392
AT2G02040 NTR1, ATPTR2-B NITRATE TRANSPORTER 1, ARABIDO... Potri.010G100200
[exp]
31.36 0.6105 NTR1.3
AT3G13310 Chaperone DnaJ-domain superfam... Potri.001G469600
[exp]
32.84 0.5275

Potri.017G000500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.