Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17060 166 / 2e-46 SHK1, CHI2, SOB7, CYP72C1 SUPPRESSOR OF PHYB-4 7, SHRINK 1, CHIBI 2, cytochrome p450 72c1 (.1) AT1G67110 136 / 2e-35 CYP735A2 "cytochrome P450, family 735, subfamily A, polypeptide 2", cytochrome P450, family 735, subfamily A, polypeptide 2 (.1) AT2G26710 134 / 8e-35 CYP72B1, CYP734A1, BAS1 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) AT1G75130 121 / 4e-30 CYP721A1 "cytochrome P450, family 721, subfamily A, polypeptide 1", cytochrome P450, family 721, subfamily A, polypeptide 1 (.1) AT3G14630 112 / 6e-27 CYP72A9 "cytochrome P450, family 72, subfamily A, polypeptide 9", cytochrome P450, family 72, subfamily A, polypeptide 9 (.1) AT3G14640 111 / 1e-26 CYP72A10 "cytochrome P450, family 72, subfamily A, polypeptide 10", cytochrome P450, family 72, subfamily A, polypeptide 10 (.1) AT3G14680 110 / 3e-26 CYP72A14 "cytochrome P450, family 72, subfamily A, polypeptide 14", cytochrome P450, family 72, subfamily A, polypeptide 14 (.1) AT3G14620 109 / 7e-26 CYP72A8 "cytochrome P450, family 72, subfamily A, polypeptide 8", cytochrome P450, family 72, subfamily A, polypeptide 8 (.1) AT3G14610 108 / 1e-25 CYP72A7 "cytochrome P450, family 72, subfamily A, polypeptide 7", cytochrome P450, family 72, subfamily A, polypeptide 7 (.1) AT3G14690 106 / 6e-25 CYP72A15 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G139400 [exp] 385 / 1e-130 AT2G26710 402 / 2e-135 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.010G139500 [exp] 379 / 3e-129 AT3G14620 283 / 4e-90 "cytochrome P450, family 72, subfamily A, polypeptide 8", cytochrome P450, family 72, subfamily A, polypeptide 8 (.1) Potri.010G139200 [exp] 297 / 1e-96 AT2G26710 369 / 6e-123 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.019G014407 [exp] 289 / 3e-93 AT2G26710 389 / 3e-130 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.019G071200 [exp] 286 / 3e-92 AT2G26710 346 / 9e-114 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.010G139300 [exp] 276 / 2e-88 AT2G26710 372 / 1e-123 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.010G139600 [exp] 243 / 1e-75 AT2G26710 395 / 6e-133 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.014G043100 [exp] 137 / 9e-36 AT1G75130 516 / 2e-180 "cytochrome P450, family 721, subfamily A, polypeptide 1", cytochrome P450, family 721, subfamily A, polypeptide 1 (.1) Potri.006G154500 [exp] 137 / 1e-35 AT2G26710 789 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036820 [exp] 275 / 1e-87 AT2G26710 397 / 2e-133 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10036822 [exp] 259 / 2e-80 AT2G26710 410 / 4e-137 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10028119 [exp] 254 / 6e-77 AT1G30130 368 / 2e-121 unknown protein Lus10004633 [exp] 245 / 3e-76 AT2G26710 378 / 4e-126 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10019177 [exp] 240 / 4e-74 AT2G26710 373 / 4e-124 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10036942 [exp] 246 / 2e-73 AT2G26710 375 / 2e-119 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10002108 [exp] 228 / 1e-69 AT2G26710 353 / 1e-116 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10019184 [exp] 226 / 8e-69 AT3G14680 369 / 2e-122 "cytochrome P450, family 72, subfamily A, polypeptide 14", cytochrome P450, family 72, subfamily A, polypeptide 14 (.1) Lus10036817 [exp] 228 / 2e-66 AT2G26710 382 / 3e-121 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10026085 [exp] 210 / 9e-63 AT2G46960 375 / 6e-125 "cytochrome P450, family 709, subfamily B, polypeptide 1", cytochrome P450, family 709, subfamily B, polypeptide 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.017G000600.2 pacid=42813624 polypeptide=Potri.017G000602.1.p locus=Potri.017G000600 ID=Potri.017G000600.2.v4.1 annot-version=v4.1 ATGGGGACGATGCCCATTTACCCCTCATGTTTCGTGTGTTTAGCCTTCCTCTCATTTCTTTTCATGTTCTTGAACAAAGTATGGTGGACTCCAGTCCGCA TACAGTCTATGATGAGGTCACAAGGAATCAAATGCCCTTCTTACAAATTCATCCATGGAAACTCCAAAGAGATTACCAATATGAGAACGAGTGTCGTGAG CTTTCCATTGGATTTATCACATGTTCATGAGTTGCTCCCCAGAGTACAGCCACACATTCACGCATGGATCAAGCTATATGGGATGAATTTTCTGTTCTGG CAAGGTCCTCACGCCCTGCTTGTTGTGACGGAACCTGATCTGATTAAACAAAAGCTATTGGGGGGTGGAAGTGTAGCAAGCAAGGGTGAAAAACGGTTCA AGCTGCAAAAAATATCGAACCATGCTTTCCATGCAGGAATTTCTCTTCTTTCACAGAACATGATTCCGGCATTCATTGCCAGTGTCGAGGTGATGCTAGA AAGATGGAGACAGCACGATGGCAAGGAGATTGAGTTGTCTCATGAGTTTAAGATTTTGACATCAGAAATGATTTCCAGGACAGCTTTTGGAAGCAGCTAC CTGGAAGGACAACATATATTTGACATGTTGGAAACAATGGTTGACATTGTTGTCAGGAACAATTTTAAAATGACAATTCCTGTAATCGGAAAATTTGTGA AATTAAGTGCTGATGACATTGAATCAGACAAGCTTCAGCAAGACATAAGCAATTGCTTCCTAAATATGATTAATAGCAGAGAGAAAGCAGCCATGGAGGG CAAATGGGATGGCTTGGAAGTAAGCATGATTATCAATGAATCTCTACGATTATATTGTCCTGCTGTTCAGATCGCAAGGATAGTCCACAAGGAAGTAAGA TTGGGGACGTTTATTCTTCCAGCGAACACGGAAATCGTTGTTCCAATTGGCGCAGTTCACCATAGCCCTGGAATATGGGGAGAAGATGCTAGCCATTTCA AGCCAGAGAGATTTGCAGATGGAGTTGCTAAAACAACAACGGCTCGGAATTGTGTGGGGTCAAACTTCTCAATTACTGAAACAAAGATTGCGCTCGCAAT GATCCTGCAGCGTTACAGGTTTACTTTTATCTCCAACTACAAGTCATGCTCGAGGCCTTGTAAATCCCCACCGTATTGGATGTGA
AA sequence Show only first row Show all	>Potri.017G000600.2 pacid=42813624 polypeptide=Potri.017G000602.1.p locus=Potri.017G000600 ID=Potri.017G000600.2.v4.1 annot-version=v4.1 MGTMPIYPSCFVCLAFLSFLFMFLNKVWWTPVRIQSMMRSQGIKCPSYKFIHGNSKEITNMRTSVVSFPLDLSHVHELLPRVQPHIHAWIKLYGMNFLFW QGPHALLVVTEPDLIKQKLLGGGSVASKGEKRFKLQKISNHAFHAGISLLSQNMIPAFIASVEVMLERWRQHDGKEIELSHEFKILTSEMISRTAFGSSY LEGQHIFDMLETMVDIVVRNNFKMTIPVIGKFVKLSADDIESDKLQQDISNCFLNMINSREKAAMEGKWDGLEVSMIINESLRLYCPAVQIARIVHKEVR LGTFILPANTEIVVPIGAVHHSPGIWGEDASHFKPERFADGVAKTTTARNCVGSNFSITETKIALAMILQRYRFTFISNYKSCSRPCKSPPYWM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G17060		SHK1, CHI2, SOB...	SUPPRESSOR OF PHYB-4 7, SHRINK...		Potri.017G000600 [exp]	0	1
					Potri.003G081133 [exp]	23.87	0.9063
AT5G17260	NAC	ANAC086	NAC domain containing protein ...		Potri.012G023900 [exp]	24.00	0.8541
					Potri.018G043850 [exp]	24.12	0.7637
AT3G46850			Subtilase family protein (.1)		Potri.009G038001 [exp]	30.24	0.8862
AT3G07300			NagB/RpiA/CoA transferase-like...		Potri.010G068600 [exp]	36.49	0.8851
AT3G03680			C2 calcium/lipid-binding plant...		Potri.008G130550 [exp]	42.14	0.8837
AT4G30420			nodulin MtN21 /EamA-like trans...		Potri.006G177800 [exp]	46.86	0.8829
					Potri.015G004900 [exp]	53.88	0.8762
AT5G03990			unknown protein		Potri.006G262800 [exp]	57.34	0.8739
AT3G24130			Pectin lyase-like superfamily ...		Potri.017G054700 [exp]	58.01	0.8616

Compare expression of checked genes

Potri.017G000600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.