Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G59940 283 / 2e-91 Galactose oxidase/kelch repeat superfamily protein (.1) AT2G44130 271 / 1e-86 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G80440 142 / 4e-38 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G15670 139 / 3e-37 Galactose oxidase/kelch repeat superfamily protein (.1) AT5G60570 70 / 1e-12 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G16250 64 / 6e-11 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G74510 62 / 5e-10 Galactose oxidase/kelch repeat superfamily protein (.1.2) AT1G26930 60 / 2e-09 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G55270 58 / 5e-09 Galactose oxidase/kelch repeat superfamily protein (.1) AT2G02870 58 / 6e-09 Galactose oxidase/kelch repeat superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G147000 [exp] 649 / 0 AT3G59940 300 / 4e-98 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.006G196900 [exp] 174 / 3e-50 AT1G15670 211 / 7e-66 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.003G218400 [exp] 160 / 5e-45 AT2G44130 185 / 4e-55 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.001G007000 [exp] 156 / 1e-43 AT1G15670 198 / 1e-60 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.001G178500 [exp] 137 / 3e-36 AT1G15670 310 / 5e-104 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.001G178300 [exp] 127 / 1e-32 AT1G80440 362 / 2e-124 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.015G063200 [exp] 69 / 3e-12 AT1G74510 529 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.013G077800 [exp] 67 / 1e-11 AT5G60570 402 / 2e-138 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.019G042100 [exp] 66 / 3e-11 AT5G60570 419 / 3e-145 Galactose oxidase/kelch repeat superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016214 [exp] 162 / 9e-46 AT2G44130 206 / 7e-63 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10017300 [exp] 161 / 1e-45 AT1G15670 203 / 9e-63 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10029329 [exp] 155 / 3e-43 AT1G15670 195 / 3e-59 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10013538 [exp] 147 / 1e-40 AT1G15670 192 / 7e-59 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10041299 [exp] 69 / 2e-12 AT5G60570 592 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10037413 [exp] 69 / 2e-12 AT5G60570 589 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10013899 [exp] 64 / 1e-10 AT1G16250 523 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10023608 [exp] 63 / 1e-10 AT1G26930 353 / 9e-120 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10036735 [exp] 63 / 3e-10 AT2G02870 570 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Lus10019425 [exp] 60 / 2e-09 AT1G55270 652 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [poplar] [flax] F-box PF00646 [poplar] [flax] F-box F-box domain CL0186 [poplar] [flax] Beta_propeller PF01344 [poplar] [flax] Kelch_1 Kelch motif
Representative CDS sequence Show only first row Show all	>Potri.017G000700.1 pacid=42813435 polypeptide=Potri.017G000700.1.p locus=Potri.017G000700 ID=Potri.017G000700.1.v4.1 annot-version=v4.1 ATGGAAGAACCAAAAACTAGTGTCAAGCTAAAAAAAGCACTACAAGATGATCAAAGGCAGCAGCTGATTCCAGGCCTTCCAGATGAGATTGCCATGGAGT GCCTGGTGAGAGTGCCTTATCAATTCCATTCCAATATGAAGTCAGTTTGCCATACCTGGCAACGCTTGATTTCCCATCCTTCCTTCTATCAACAAAGGCT CCAATCTGGCACTGCCGAACATCTTGTTTGCCTTGTCCAACCTCTACCCCCGATAAACCACTCCACTACTTCTACTACTACTGATGATGATGATGATGAT GATGATCCCCTTATCAGCAGCAGCAGCAATAATAAAATTCTTAAAAACGAAGACAAGCAAGAGGAGCAGCAGCACATACACAGCCCACCTCAGTATGCAC TGAGCACCTACAATGCCACGCATAACATCTGGCAGAGGACAAGGCCTCCAGAGGGATCACGAATTCCCATGTTCTGCCAATGTTTAGCCCTTCCATCCTC TGGCAAGCTACTCCTCTTAGGTGGTTGGGATCCTACCACCCTGGAGCCAGTCCCTCATGTATACATCCTGGATCTCATCGAGACTACTGGAGCTGCCTGC AAATGGAGACGCGGAGCTTCAATGTCAGTGCCACGCTCTTTCTTTGCCTGTGGTGTCGTTGGACCCTCTACAGTGTGCGTGGCAGGAGGGCATGACAGTC AGAAGAATGCATTGCGATCGGCAGAAGTCTATGACGTGGAGACAGACCAATGGGAAATGTTGCCAGATATGATTGAAGAGAGGGATGAGTGTCAGGGATT GTCTTGGGAGGGGGATTCCAAGTTCTGGGTTGTGAGTGGATATGGCACAGAAAGCCAGGGGCAATTCAGGTCTGATGTTGAGTTTTATGATCGCCATACT GGGTGTTGGTCTAAGATTGATGGGGTTTGGCCTTTTTCGACAACTAGCCCTAGAGTAGTCACAACTACAGTTTGTGTCAGCAGGGACAAATACCAATGGT CATGGTTCTTGGGAGGTGAACAACAGTCGCAGCAGCAGCAAAGCAGAGAAGTAGTCAAGGTCAGTGACAACATTAGATTGGAAATAGTCAGTTCAATTCC ACTTCCAAATTGCATAACTGGAACAACCCCATGTGTGACTGCTCTTGATTATGTTGGCCAAGAAGGTGGGAACCATCGATTGTTTGTAATGAGTGGCGGT GGTGGCAGGGGATCCTCAACACTAGCTTGTGGCGAATGTGAAGGGGAAGGGGCATTCCTCTCTGATGGATATAGCAATAACGGCACCATCAAGTGGAGGC ATATCCACACTCCCGTGGGATTTTCTGGTTTTCCATACTCAGCTTCTTCTCTCGTAATCTGA
AA sequence Show only first row Show all	>Potri.017G000700.1 pacid=42813435 polypeptide=Potri.017G000700.1.p locus=Potri.017G000700 ID=Potri.017G000700.1.v4.1 annot-version=v4.1 MEEPKTSVKLKKALQDDQRQQLIPGLPDEIAMECLVRVPYQFHSNMKSVCHTWQRLISHPSFYQQRLQSGTAEHLVCLVQPLPPINHSTTSTTTDDDDDD DDPLISSSSNNKILKNEDKQEEQQHIHSPPQYALSTYNATHNIWQRTRPPEGSRIPMFCQCLALPSSGKLLLLGGWDPTTLEPVPHVYILDLIETTGAAC KWRRGASMSVPRSFFACGVVGPSTVCVAGGHDSQKNALRSAEVYDVETDQWEMLPDMIEERDECQGLSWEGDSKFWVVSGYGTESQGQFRSDVEFYDRHT GCWSKIDGVWPFSTTSPRVVTTTVCVSRDKYQWSWFLGGEQQSQQQQSREVVKVSDNIRLEIVSSIPLPNCITGTTPCVTALDYVGQEGGNHRLFVMSGG GGRGSSTLACGECEGEGAFLSDGYSNNGTIKWRHIHTPVGFSGFPYSASSLVI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G59940			Galactose oxidase/kelch repeat...		Potri.017G000700 [exp]	0	1
					Potri.017G044550 [exp]	53.04	0.8116
AT4G39120		HISN7, IMPL2	HISTIDINE BIOSYNTHESIS 7, myo-...		Potri.009G120600 [exp]	66.33	0.8099
AT5G45390		NCLPP3, NCLPP4,...	NUCLEAR-ENCODED CLP PROTEASE P...		Potri.001G130601 [exp]	68.27	0.7224
AT4G34588		CPuORF2	conserved peptide upstream ope...		Potri.009G119650 [exp]	77.56	0.7932
AT1G27940		ABCB13, PGP13	ATP-binding cassette B13, P-gl...		Potri.012G004150 [exp]	79.09	0.7152
					Potri.001G280604 [exp]	145.55	0.7842
AT4G31560		HCF153	high chlorophyll fluorescence ...		Potri.003G203300 [exp]	153.73	0.7833
AT1G09600			Protein kinase superfamily pro...		Potri.003G003700 [exp]	173.89	0.7084
AT5G01650			Tautomerase/MIF superfamily pr...		Potri.016G126800 [exp]	188.74	0.7094
AT2G41180		SIB2	sigma factor binding protein 2...		Potri.016G093900 [exp]	193.23	0.7240

Compare expression of checked genes

Potri.017G000700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.