Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21065 793 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT5G48910 482 / 3e-163 LPA66 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G01510 478 / 2e-162 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G59720 473 / 5e-160 CRR28 CHLORORESPIRATORY REDUCTION28, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G06540 465 / 8e-157 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G66520 463 / 3e-156 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G03880 462 / 1e-155 REME1 required for efficiency of mitochondrial editing 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G62890 460 / 1e-155 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G23330 462 / 8e-155 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G47530 458 / 1e-154 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G369900 [exp] 515 / 2e-176 AT5G66520 512 / 2e-175 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G065500 [exp] 509 / 2e-174 AT5G06540 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G168800 [exp] 507 / 1e-173 AT2G02980 860 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 85, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G252400 [exp] 486 / 3e-167 AT4G21065 496 / 8e-172 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.001G135400 [exp] 488 / 5e-166 AT1G31920 738 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G105700 [exp] 479 / 1e-161 AT3G08820 810 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G031600 [exp] 480 / 3e-161 AT3G15930 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G231200 [exp] 473 / 2e-160 AT5G66520 504 / 1e-172 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G092400 [exp] 472 / 7e-160 AT1G59720 810 / 0.0 CHLORORESPIRATORY REDUCTION28, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013319 [exp] 801 / 0 AT4G21065 744 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10005207 [exp] 792 / 0 AT4G21065 741 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10029344 [exp] 507 / 3e-173 AT5G06540 803 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10017446 [exp] 466 / 1e-154 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10014298 [exp] 455 / 7e-153 AT5G66520 748 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10023592 [exp] 455 / 1e-152 AT1G74630 840 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10026006 [exp] 454 / 3e-152 AT5G66520 746 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029436 [exp] 455 / 5e-152 AT3G08820 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10029401 [exp] 447 / 1e-150 AT1G34160 674 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10035788 [exp] 452 / 1e-149 AT3G16610 636 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0109 [poplar] [flax] CDA PF14432 [poplar] [flax] DYW_deaminase DYW family of nucleic acid deaminases
Representative CDS sequence Show only first row Show all	>Potri.017G001000.4 pacid=42814172 polypeptide=Potri.017G001000.4.p locus=Potri.017G001000 ID=Potri.017G001000.4.v4.1 annot-version=v4.1 ATGATATTTAAGAACACACGTTCAAAGGCAGTCCAAAAGACATTGCAATCCGTTTTTAGTGTTCAGAAATTAGAGGAACATTGTTGTTTTGTCTTCTTCC ATGCTTTCAGTCATTACATTTTCCATGCAAAGATGAGTACAAATCCATCCTGCCCAGATAACCGAATACCTTACGTTGTCCGAAAATGCATTGCCCTTTT GCAAATTTGTGCCACTTCCAAGTTTAAATTGAAACAAATCCATGCCTTCTCTATCAGACATGGCATCCCAGTAACCAACTTAGACATGGGCAAGCACCTT ATATACACTGCTGTTTCCGTTTCGGTCCCTATGAACTATGCACACAATATTTTTACCCAAATCCAAAGCCCAAACGTTTTCACATGGAATACCATGATTA GAGGCTATGCTGAGAGTGAAAATCCAAAATCAGCCATTGAATTGTACCACCACATGCAACTGAAACCTGACACACACACATATCCTTTTCTTTTGAAGGC CGTGTCTAAGGTGGTCGATGTTAAAGTGGGTGAAAAGATACATTCCCTTGTTGCAAAAAATGGGTTCGAATCATTGTTGTTTGTTCAAAACAGTTTGCTT CACATGTATGCTGCTTGTGGCCAGTTCGAGAGTGCATACAAAGTATTTGAATTAATGCCTGAGAAGGATATTGTGGCTTGGAATTCTGTGATTAATGGTT TTGCTCTGAACGGGAAACCCAATGAGGCTTTAACACTTTATAAGAGAATGGGTTCTGAAGGTGTTGAGCCGGACGGATTCACTATGGTTAGTTTGCTGTC TGCCTGTGCTGAGCTTGCAACGTTGGCCTTGGGCGGGAGGGCTCATGCGTTTATGGTGAAAGTTGGTCTCAACAAAAATTTGCAAGTTAATAATGCCCTT CTGGACCTTTATGCAAAGTGCGGAACCATTAGTGAAGCACGCAAGATTTTTGATGAGATGGGAATTGAGAGGAATGTGGTTTCTTGGACTTCTTTGATTG TTGGATTGGCTGTTAATGGATTCGGTAAAGAAGCTCTTGAGCATTTCAAGGATATGGAGAGAGAGGGATTGGTGCCTAGTGAGATCACTTTTGTTGGGGT CTTATATGCTTGTAGTCATTGCGGTATAGTTAATGAGGGGTTTGAATACTTCAAAAGGATGAAGGAGCAATATGATATTGTGCCTAGAATAGAGCACTAT GGTTGCATGGTTGATTTGCTTGGTAGAGCAGGCTTGTTGAAAGAAGCATATGATTATATTCAGGATATGCCACTGCAGCCTAATGCTGTTATTTGGAGGA CCTTGTTAGGGGCTTGCACAATACATGGGCATTTAGGCTTAGGAGCATTTGCAAGAGCCCGACTCTTGCAGTTGGAGCCTAAAGACAGCGGAGATTATGT GCTACTCTCCAACCTGTATGCATCCGAGCAGCGTTGGTCAGATGTACATGAGGTGAGAAGGACAATGCTTAGTGAAGGAGTCAGAAAAACTCCAGGGTAT AGCCTTGTAGAGTTGGGAAATCATGTCCATGAGTTTGTTATGGGTGATAGGACTCATCCTCAAAGTGAGGCAATATATAAAATGCTAGTGGAGATGGCCA TGAAGTTGAAATTGGCAGGCTATGTGCCTCACACGGCAAATGTGCTTGCAGACATTGAAGAGGAAGAAAAGGAAAGTGCTTTGTTTTATCATAGTGAGAA GATTGCAATTGCTTTTATGCTCATTAATACACTACCAGGGACCCCAATTAGGATTATTAAGAATTTAAGAGTATGCGCAGATTGTCATTTTGCAATTAAG CTGATATCAAAGGTTTTTGAAAGAGACATTGTTGTGAGGGACTGCAGCCACTTTCACCATTTTAGAGACGGTTCTTGTTCTTGTAGGGATTACTGGTGA
AA sequence Show only first row Show all	>Potri.017G001000.4 pacid=42814172 polypeptide=Potri.017G001000.4.p locus=Potri.017G001000 ID=Potri.017G001000.4.v4.1 annot-version=v4.1 MIFKNTRSKAVQKTLQSVFSVQKLEEHCCFVFFHAFSHYIFHAKMSTNPSCPDNRIPYVVRKCIALLQICATSKFKLKQIHAFSIRHGIPVTNLDMGKHL IYTAVSVSVPMNYAHNIFTQIQSPNVFTWNTMIRGYAESENPKSAIELYHHMQLKPDTHTYPFLLKAVSKVVDVKVGEKIHSLVAKNGFESLLFVQNSLL HMYAACGQFESAYKVFELMPEKDIVAWNSVINGFALNGKPNEALTLYKRMGSEGVEPDGFTMVSLLSACAELATLALGGRAHAFMVKVGLNKNLQVNNAL LDLYAKCGTISEARKIFDEMGIERNVVSWTSLIVGLAVNGFGKEALEHFKDMEREGLVPSEITFVGVLYACSHCGIVNEGFEYFKRMKEQYDIVPRIEHY GCMVDLLGRAGLLKEAYDYIQDMPLQPNAVIWRTLLGACTIHGHLGLGAFARARLLQLEPKDSGDYVLLSNLYASEQRWSDVHEVRRTMLSEGVRKTPGY SLVELGNHVHEFVMGDRTHPQSEAIYKMLVEMAMKLKLAGYVPHTANVLADIEEEEKESALFYHSEKIAIAFMLINTLPGTPIRIIKNLRVCADCHFAIK LISKVFERDIVVRDCSHFHHFRDGSCSCRDYW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G21065			Tetratricopeptide repeat (TPR)...		Potri.017G001000 [exp]	0	1
AT5G13230			Tetratricopeptide repeat (TPR)...		Potri.003G164900 [exp]	1.00	0.8937
AT4G33170			Tetratricopeptide repeat (TPR)...		Potri.006G076100 [exp]	2.23	0.8468
AT1G23180			ARM repeat superfamily protein...		Potri.010G110200 [exp]	3.74	0.8660
AT3G18840			Tetratricopeptide repeat (TPR)...		Potri.004G152000 [exp]	4.89	0.8655
AT1G11900			Tetratricopeptide repeat (TPR)...		Potri.001G273100 [exp]	7.14	0.8656
AT3G09040			Pentatricopeptide repeat (PPR)...		Potri.005G187800 [exp]	7.34	0.8261
AT3G18840			Tetratricopeptide repeat (TPR)...		Potri.004G151500 [exp]	8.36	0.8181
AT3G21740		APO4	ACCUMULATION OF PHOTOSYSTEM ON...		Potri.017G037200 [exp]	8.48	0.8454
AT1G56570		PGN	PENTATRICOPEPTIDE REPEAT PROTE...		Potri.013G006700 [exp]	9.53	0.8060
AT1G80880			Tetratricopeptide repeat (TPR)...		Potri.001G043500 [exp]	10.24	0.8393

Compare expression of checked genes

Potri.017G001000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.