Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-GDI.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44100 775 / 0 AT-GDI1, ATGDI1 guanosine nucleotide diphosphate dissociation inhibitor 1 (.1.2) AT3G59920 773 / 0 ATGDI2 RAB GDP dissociation inhibitor 2 (.1) AT5G09550 736 / 0 GDP dissociation inhibitor family protein / Rab GTPase activator family protein (.1) AT3G06540 95 / 7e-21 AthREP Rab escort protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G146600 [exp] 859 / 0 AT2G44100 777 / 0.0 guanosine nucleotide diphosphate dissociation inhibitor 1 (.1.2) Potri.007G115300 [exp] 756 / 0 AT5G09550 785 / 0.0 GDP dissociation inhibitor family protein / Rab GTPase activator family protein (.1) Potri.005G028900 [exp] 112 / 2e-26 AT3G06540 605 / 0.0 Rab escort protein (.1) Potri.005G030000 [exp] 105 / 4e-24 AT3G06540 602 / 0.0 Rab escort protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027094 [exp] 835 / 0 AT3G59920 800 / 0.0 RAB GDP dissociation inhibitor 2 (.1) Lus10008341 [exp] 833 / 0 AT3G59920 800 / 0.0 RAB GDP dissociation inhibitor 2 (.1) Lus10035634 [exp] 732 / 0 AT5G09550 778 / 0.0 GDP dissociation inhibitor family protein / Rab GTPase activator family protein (.1) Lus10010760 [exp] 729 / 0 AT5G09550 778 / 0.0 GDP dissociation inhibitor family protein / Rab GTPase activator family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF00996 [poplar] [flax] GDI GDP dissociation inhibitor
Representative CDS sequence Show only first row Show all	>Potri.017G001200.2 pacid=42814633 polypeptide=Potri.017G001200.2.p locus=Potri.017G001200 ID=Potri.017G001200.2.v4.1 annot-version=v4.1 ATGGATGAAGAGTATGATGTGATTGTTTTGGGCACTGGTCTCAAAGAATGCATCCTCAGTGGTCTTCTCTCCGTTGACGGCCTCAAGGTCCTGCATATGG ACAGGAATGACTACTACGGGGGAGAGTCTGCGTCGCTGAACCTCATTCAGCTCTGGAAGAGGTTCAGGGGAAACGATAAGCCTCCAGCACATCTGGGCTC AAGCAGGGATTATAATGTTGACATGATTCCTAAGTTTATGATGGCAAATGGCAATCTTGTACGTGTCCTCATTCACACAGATGTTACCAAGTATCTGTAC TTCAAAGCAGTGGATGGCGGCTACGTCTTCAACAAGGGAAAGGTCCACAAGGTGCCCGCAACTGATATGGAGGCACTCAAATCTCCTCTCATGGGTCTTT TTGAAAAGCGCCGTGCTCGCAAGTTTTTCATATATGTCCAGAACTACGAAGACAGTGATCCTAAAACCCATGAGGGAATGGACTTGACTAGAGTGACTAC CAGAGAACTGATTGCAAAATATGGTCTTGATGACAATACCATAGACTTCATCGGTCATGCATTGGCACTACATAGAGATGATCGCTACCTAAATGAACCT GCACTGGATACTGTTAAAAGGATGAAGCTATATGCGGAGTCCCTTGCCCGTTTTCAAGGAGGATCACCATATATTTACCCTCTGTATGGTTTAGGAGAGC TCCCACAGGCATTTGCACGGCTTAGTGCTGTTTATGGAGGCACATACATGTTGAATAAACCTGAGTGCAAGGTAGAGTTCAACGAGGAAGGCAAAGTTGC TGGTGTCACATCAGAAGGGGAAACTGCTAAGTGCAAGAAAGTTGTTTGTGATCCTTCCTACTTACCCAACAAGGCTAGGAAGGTTGGTAGGGTTGCAAGG GCAATTGCCATTATGAGCCACCCAATACCAAGCACCGATGAATCTCATTCAGTGCAGGTTATCCTGCCACAGAAGCAGCTGGGTCGCAGATCAGACATGT ACCTTTTCTGCTGTTCTTATACCCACAATGTTGCTCCAAAGGGAAAATTCATTGCATTTGTATCAACCGAGGCAGAGACTGATCATCCTGAATCTGAATT GAAACCTGGAATTGACCTCCTAGGTCCTGTTGATGAGATATTCTTCGATATTTATGACAGATATGAACCAGTCAATGAACCTTCTTTGGACAATTGCTTT ATTTCGACAAGCTATGATGCCACAACACACTTTGAGTCAACTGTTACAGATGTTCTGAACATGTATACCATGATAACTGGAAAGGTTGTTGACCTCAGTG TGGATTTAAGTGCTGCCAGTGCTGCGGAGGAATGA
AA sequence Show only first row Show all	>Potri.017G001200.2 pacid=42814633 polypeptide=Potri.017G001200.2.p locus=Potri.017G001200 ID=Potri.017G001200.2.v4.1 annot-version=v4.1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESASLNLIQLWKRFRGNDKPPAHLGSSRDYNVDMIPKFMMANGNLVRVLIHTDVTKYLY FKAVDGGYVFNKGKVHKVPATDMEALKSPLMGLFEKRRARKFFIYVQNYEDSDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEP ALDTVKRMKLYAESLARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFNEEGKVAGVTSEGETAKCKKVVCDPSYLPNKARKVGRVAR AIAIMSHPIPSTDESHSVQVILPQKQLGRRSDMYLFCCSYTHNVAPKGKFIAFVSTEAETDHPESELKPGIDLLGPVDEIFFDIYDRYEPVNEPSLDNCF ISTSYDATTHFESTVTDVLNMYTMITGKVVDLSVDLSAASAAEE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G44100		AT-GDI1, ATGDI1	guanosine nucleotide diphospha...		Potri.017G001200 [exp]	0	1	Pt-GDI.1
AT3G52990			Pyruvate kinase family protein...		Potri.006G117400 [exp]	1.00	0.8822
AT1G05350			NAD(P)-binding Rossmann-fold s...		Potri.015G096300 [exp]	6.00	0.8170
AT5G43330		c-NAD-MDH2	cytosolic-NAD-dependent malate...		Potri.008G166800 [exp]	6.70	0.8332	CMDH.2
AT3G60820		PBF1	N-terminal nucleophile aminohy...		Potri.014G069800 [exp]	8.94	0.8696	PBF1.2
AT5G43960			Nuclear transport factor 2 (NT...		Potri.002G257000 [exp]	9.59	0.8089
AT1G66680		AR401	S-adenosyl-L-methionine-depend...		Potri.015G062400 [exp]	11.22	0.7708	Pt-AR401.1
AT2G27020		PAG1	20S proteasome alpha subunit G...		Potri.001G224100 [exp]	12.84	0.8282	Pt-PAG1.1
AT5G13490		AAC2	ADP/ATP carrier 2 (.1.2)		Potri.009G062200 [exp]	13.22	0.8415	Pt-ANT2.1
AT4G38630		ATMCB1, MBP1, A...	MULTIUBIQUITIN-CHAIN-BINDING P...		Potri.004G173700 [exp]	15.96	0.7550
AT5G19780		TUA5	tubulin alpha-5 (.1)		Potri.001G004600 [exp]	18.76	0.8263

Compare expression of checked genes

Potri.017G001200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.