Plant FIBer expression Database

Potri.017G001300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G59910 859 / 0 Ankyrin repeat family protein (.1)
AT2G44090 826 / 0 Ankyrin repeat family protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G146500
[exp]
1177 / 0 AT3G59910 847 / 0.0 Ankyrin repeat family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10005306
[exp]
999 / 0 AT3G59910 877 / 0.0 Ankyrin repeat family protein (.1)
Lus10010581
[exp]
997 / 0 AT3G59910 885 / 0.0 Ankyrin repeat family protein (.1)
PFAM info
Representative CDS sequence
>Potri.017G001300.5 pacid=42813598 polypeptide=Potri.017G001300.5.p locus=Potri.017G001300 ID=Potri.017G001300.5.v4.1 annot-version=v4.1
ATGGAAAAGGAGATAACATTTGTTGAGGGCACTGATATGCATCTGGAGGATGAGTTTTGCCCAGAACAGTCATTTAGTGTGGAAATGGAGACTGAAGAGA
ATGAAATTGGAAGTCCAAAGAGTGAAATTCAATGTTTCTCATCAGAAACGGGGGAGGGAAGTAATGTTGTATTTTCAAGAGAAGCACCCCTTATAAGTAA
AGAGACAAGAATTTCTGGTGTTTGTAGCTGTAGTACGAAAAAACTCAAGCCACGTGTGGTTGCGATGAAGTCTGAGATTGGCAATAAGGAGAATTTTGGA
CAGGAGAAGAAACTCAGCAGGCAAGATAGGATTGAGTTGGGTCGGATGTTTCAAAGCGCAGTGAGTTGCCATGACTGGGAGCCTGCTGAGAGCTTGATAT
TGCTGGCTGATGCACAAACCCTTAATGATGCCTTGTGCATCACGCTGGACTCTATCTGGTTTTTGAGCACACAGCAAGAACTTGATGGGATAACTGGACT
GATTAAGAAGATTATAGCCAATGGCGCTTATGACTTCACTAGAGCTGCTCTCAGAACTTCTTTTCTTGCTTCATGTGTTTCTGCCTGCCAGAGCCAAACA
ATGCATCTTGAAGACACAGTCAATGTAATGGCCCAAAGATTGAAGGAGCGACTTCAGGAGTGCAATGGGGATGAGGTCTTGAAGGCAGAAGCCAGTGCCA
AGGTTCAAAAGTTTACCGAGTGGGCTCTGAAATGTATTGGCTTCCATTCCCGCTGCCAGGTAAATAGAGACCGAGTGATTCAAAGCTCAATTGCTGAGGT
TCAACTCCAATTGTCTGCATTCAAGACATTTCTTGATCTTGCTGGCAATCAACTCACTGGGAAGGATTTCACTGAGGCCTTTGATGCAGCCTGTTTTCCT
CTTACTCTATTTTCCAGTTCATTCAATCCTGGCTGGTCATCTGGGATATCAGCAACTGCAATCCAAGGGTTGCTTGGCATGTTGGTTGAAGGGGGTGCAG
ACAATGTCAACCAGTGTTTCCTTGAAGCCTCTCGTTTCGGAAGTACAGAACTTGTGCGCATTTTGTTGCAGATTGCCCATAGGAACAGCTTGGATGTTGA
TGTTGACTTGGCCCTAGGTTTTGCTTCTCACTATTGCAAAATTGGTACAATGGAATGTCTTGTGGAAGAGGGCAATGCTATAGCCTTCCTGGGTCCTTTG
ATGAGAGCATCTGAAAGGGGTTGCATGCAGGTTGTTCAGTGGTTTGTGAAAAGGGGTTGCCGTGACATGGAACTCTGCCTTGCTCTCACGGCTGCGACTT
CCAGTAGTCAAGTTGATGTTGCTGGATATCTCCTCCCTCACGTTCCTCAGCATGTTCTTGCTGCCCTCAGTATAGAAATTCTCAAGGCTGCTGGGGAGCG
AAGTGGTGGGTCGCTTGATGGTGTGGCATTTCTTTTGCATTCTGATTTCTTGGGTGATCCTACTGCTACTTATGCTGTTGCAGACAGCATTGCTCGCTCT
GATGATGAGTCTGTTGCCCCTGAGCTCAAGGCTTTTCTTCGAGAGAACTGGTCAGAGGCAGCTTTCTTGGATGGATTAAAGCAAGGACAAGAACATTACA
TGAATCTCGTGATGATTTTGAATTGGGGTAGATCGCCTATATCCCTAAGGCATCTGCCAGGCCCTTTAAGAGTGGCAGTTGCTTATCTGCCATTGTACAG
GGAGTGTGCAGCAACGGCTGGTCGTTTATTTTCACAGAAACAAAGGGGGCTGCTTGTTGAAGCTGTGAGAAAACTTGGGGGTGGGTCCTCAGAAGATGTG
AGCCAAGGGAAAGAGCTCTTGGCTGTTTTGGAGCATTACCTTCCTCAATTTCTGGTTCATCCCCGCAGGATGCCCTAG
AA sequence
>Potri.017G001300.5 pacid=42813598 polypeptide=Potri.017G001300.5.p locus=Potri.017G001300 ID=Potri.017G001300.5.v4.1 annot-version=v4.1
MEKEITFVEGTDMHLEDEFCPEQSFSVEMETEENEIGSPKSEIQCFSSETGEGSNVVFSREAPLISKETRISGVCSCSTKKLKPRVVAMKSEIGNKENFG
QEKKLSRQDRIELGRMFQSAVSCHDWEPAESLILLADAQTLNDALCITLDSIWFLSTQQELDGITGLIKKIIANGAYDFTRAALRTSFLASCVSACQSQT
MHLEDTVNVMAQRLKERLQECNGDEVLKAEASAKVQKFTEWALKCIGFHSRCQVNRDRVIQSSIAEVQLQLSAFKTFLDLAGNQLTGKDFTEAFDAACFP
LTLFSSSFNPGWSSGISATAIQGLLGMLVEGGADNVNQCFLEASRFGSTELVRILLQIAHRNSLDVDVDLALGFASHYCKIGTMECLVEEGNAIAFLGPL
MRASERGCMQVVQWFVKRGCRDMELCLALTAATSSSQVDVAGYLLPHVPQHVLAALSIEILKAAGERSGGSLDGVAFLLHSDFLGDPTATYAVADSIARS
DDESVAPELKAFLRENWSEAAFLDGLKQGQEHYMNLVMILNWGRSPISLRHLPGPLRVAVAYLPLYRECAATAGRLFSQKQRGLLVEAVRKLGGGSSEDV
SQGKELLAVLEHYLPQFLVHPRRMP

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G59910 Ankyrin repeat family protein ... Potri.017G001300
[exp]
0 1
AT5G65720 ATNIFS1, NIFS1 ... NITROGEN FIXATION S HOMOLOG 1,... Potri.008G005101
[exp]
16.24 0.6643
AT3G09100 mRNA capping enzyme family pro... Potri.016G110700
[exp]
17.00 0.7464
AT4G17080 Histone H3 K4-specific methylt... Potri.003G085000
[exp]
28.98 0.6852
AT5G62570 Calmodulin binding protein-lik... Potri.015G071800
[exp]
31.08 0.6622
AT3G47570 Leucine-rich repeat protein ki... Potri.004G069001
[exp]
37.60 0.6892
Potri.004G011201
[exp]
40.65 0.6714
AT2G20050 protein serine/threonine phosp... Potri.018G084900
[exp]
49.04 0.6120
AT4G30340 ATDGK7 diacylglycerol kinase 7 (.1) Potri.006G174700
[exp]
57.16 0.6679
AT4G03000 RING/U-box superfamily protein... Potri.010G027900
[exp]
71.51 0.6382
AT3G08505 C3HZnF zinc finger (CCCH-type/C3HC4-t... Potri.009G062600
[exp]
78.94 0.6439

Potri.017G001300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.