Plant FIBer expression Database

Potri.017G001600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G31890 739 / 0 ATRAP RAP (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10033769
[exp]
780 / 0 AT2G31890 692 / 0.0 RAP (.1)
Lus10006144
[exp]
470 / 6e-163 AT2G31890 435 / 1e-149 RAP (.1)
Lus10006143
[exp]
177 / 6e-51 AT2G31890 107 / 3e-26 RAP (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0236 PDDEXK PF08373 RAP RAP domain
Representative CDS sequence
>Potri.017G001600.1 pacid=42813649 polypeptide=Potri.017G001600.1.p locus=Potri.017G001600 ID=Potri.017G001600.1.v4.1 annot-version=v4.1
ATGAAAGGGTTACTAAACACCTTCCCTCAACGTAGTTTCTTAAAGCCCTTCATTTTCAGTCCAAAAACAAGTTATAATCTTCCAGTGATGAAAGTTGGAA
CTGGGTTTATGTATGGAAGACTTGAAGTGGGTTTCTCTAGAGGGACGAAGACAAATTGTGTGTATTTAAGTAGAGATAGTGTTGTTAGCAGTGAAGGAGT
TGTTGATAGTGATAAGGATAAGGAAGATGAGGATTGGAAATTGGAGTTTCTTGGGGAGCTTGATCCATTGGGTTGTCAAGCATCTAAGAAGAGGAAAAAG
CAACAAAATTCAGGATTGCTGAAAGATACTGATGGGATGGATTGGTGTTTGAGGGCGAGAAAGGTTGCCCTCAAGTCGATTGAGGCGAGGGGGTTGAGTC
AGAGAATGGAAGATTTGATTAATGTAAAGAAGAAGAAAAAGAAAAGGAATAAGAAAAAGTTGGTTGGTAAGGTTAAGAAAGTTAAGGACTTTGAAGAAGA
TGATTTGGATTTTGATTTGGACGAAGGTGTTGAATTGGAAGAAGGTGATGCTGACCTTAAAAGGATGGTGAGTATGTTAGGGGATGGCATGTTTCAAGAA
AGGAAAGAGAAGACCATGGAAGAGTTTCTTCAGAGGCTATCCCAATTCTCTGGACCTTCTGATCGTAAGAAAGAGATTAACTTGAATAGAGCGATTGTGG
AAGCACAGACTGCAGAGGAAGTTTTGGAAATCACTGCTGAGATGATTATGGCTGTTGGGAAGGGGTTGAGTCCTTCACCACTATCCCCATTGAATATTGC
CACTGCACTTCATCGAATTGCTAAGAACATGGAGAAGGTTTCAATGATGAATACTCGTAGGTTGGCATTTGCTCGACAGAAAGAGGTGTCGATGCTGGTT
GGTATTGCTATGACAGCATTGCCTGAATGTTCAGCGCAAGGTATCTCAAATATTTCTTGGGCATTGTCTAAGATAGGAGGGGAGCTACTTTACTTGTCAG
AAATGGATAGAGTTGCAGAGGTGGCCTTGACCAAGGTTGGGGAGTTCAATTCACAGAATGTTGCTAATGTCGCTGGTGCTTTGGCTTCAATGCAGCACTC
TGCTCCTGATCTATTTTCAGCATTGTCAAAAAGGGGCTCCGAGATAATTCATACTTTCCAAGAGCAGGAGCTTGCTCAGGTTTTGTGGGCTTTTGCGTCT
CTGTATGAGCCAGCTGACTCTTTGCTTGATGCCTTGGATACTGTTTTCAAAAATGCAAACCAACTTGAATGCTCCTTAAAGACTAAAACATCATACTCTG
ATGAGGAGAGAAGCAATGAAGACAGTGGAGATCTCGATGCAGAAGGACCTCTACGGTCTCCAGTGCTCAGTTTTAATAGGGATCAGCTTGGGAATATAGC
TTGGTCATATGCTGTTATTGGACAATTGGACCGAATTTTCTTTTCAAATGTGTGGAGAACTCTGAGCCATTTTGAGGAGCAAAGGCTTTCAGAGCAATAT
AGAGAGGATATAATGTTCGCTTCTCAGGCTCATCTTGTGAATCAATGCTTGAAGCTTGAGTACCCGCATCTTAGGTTGTCTCTTGGGGACAATCTGGAGG
AGAAAATTGCTCGTGCTGGAAAAACTAAGAGGTTTAATCAGAAAACAACTTCATCATTTCAGAAGGAAGTTGCTCGGCTTCTCGTCAGCACTGGCCTTGA
TTGGGTGAGAGAATATGTTGTGGATGGGTACACTGTGGATGCTGTTGTGGTTGATAAGAAGATTGCTTTGGAGATAGATGGACCAACTCATTTCTCCAGG
AATACTGGGATGCCTTTAGGACATACCATGCTGAAACGGCGGTACATTGCTGCTGCTGGTTGGAACGTGGTATCATTGTCTCATCAAGAGTGGGAGGAAA
TAGAAGGAAGTTATGAGCAGCAAGAGTACCTGAGAGAAATCCTCAAGGAGCATATAGGTGGAGACAGTAGTAGTTGCAGCAAAGATGAATAA
AA sequence
>Potri.017G001600.1 pacid=42813649 polypeptide=Potri.017G001600.1.p locus=Potri.017G001600 ID=Potri.017G001600.1.v4.1 annot-version=v4.1
MKGLLNTFPQRSFLKPFIFSPKTSYNLPVMKVGTGFMYGRLEVGFSRGTKTNCVYLSRDSVVSSEGVVDSDKDKEDEDWKLEFLGELDPLGCQASKKRKK
QQNSGLLKDTDGMDWCLRARKVALKSIEARGLSQRMEDLINVKKKKKKRNKKKLVGKVKKVKDFEEDDLDFDLDEGVELEEGDADLKRMVSMLGDGMFQE
RKEKTMEEFLQRLSQFSGPSDRKKEINLNRAIVEAQTAEEVLEITAEMIMAVGKGLSPSPLSPLNIATALHRIAKNMEKVSMMNTRRLAFARQKEVSMLV
GIAMTALPECSAQGISNISWALSKIGGELLYLSEMDRVAEVALTKVGEFNSQNVANVAGALASMQHSAPDLFSALSKRGSEIIHTFQEQELAQVLWAFAS
LYEPADSLLDALDTVFKNANQLECSLKTKTSYSDEERSNEDSGDLDAEGPLRSPVLSFNRDQLGNIAWSYAVIGQLDRIFFSNVWRTLSHFEEQRLSEQY
REDIMFASQAHLVNQCLKLEYPHLRLSLGDNLEEKIARAGKTKRFNQKTTSSFQKEVARLLVSTGLDWVREYVVDGYTVDAVVVDKKIALEIDGPTHFSR
NTGMPLGHTMLKRRYIAAAGWNVVSLSHQEWEEIEGSYEQQEYLREILKEHIGGDSSSCSKDE

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G31890 ATRAP RAP (.1) Potri.017G001600
[exp]
0 1
AT3G26900 ATSKL1 Arabidopsis thaliana shikimate... Potri.017G062800
[exp]
4.35 0.9768 SK1
AT3G19490 ATNHD1 ARABIDOPSIS THALIANA NA/H ANTI... Potri.001G301000
[exp]
7.34 0.9708 NHD1.2
AT3G09210 PTAC13 plastid transcriptionally acti... Potri.006G094800
[exp]
8.00 0.9734
AT1G02150 Tetratricopeptide repeat (TPR)... Potri.002G139400
[exp]
9.59 0.9677
AT2G44760 Domain of unknown function (DU... Potri.002G138600
[exp]
9.94 0.9649
AT1G11870 AtSRS, OVA7 ovule abortion 7, Seryl-tRNA s... Potri.002G100300
[exp]
10.19 0.9642
AT1G69200 FLN2 fructokinase-like 2 (.1) Potri.008G097300
[exp]
11.83 0.9662
AT4G29060 EMB2726 embryo defective 2726, elongat... Potri.018G083900
[exp]
13.96 0.9671
AT5G45170 Haloacid dehalogenase-like hyd... Potri.015G112500
[exp]
14.00 0.9641
AT1G59840 CCB4 cofactor assembly of complex C... Potri.008G191900
[exp]
14.49 0.9563

Potri.017G001600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.