Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05610 533 / 0 APS2 ADP-glucose pyrophosphorylase small subunit 2 (.1) AT5G48300 434 / 2e-147 APS1, ADG1 ADP-GLUCOSE PYROPHOSPHORYLASE SMALL SUBUNIT 1, ADP glucose pyrophosphorylase 1 (.1) AT1G27680 332 / 7e-108 APL2 ADPGLC-PPase large subunit (.1) AT4G39210 324 / 7e-105 APL3 Glucose-1-phosphate adenylyltransferase family protein (.1) AT5G19220 320 / 3e-103 ADG2, APL1 ADP GLUCOSE PYROPHOSPHORYLASE 2, ADP glucose pyrophosphorylase large subunit 1 (.1) AT2G21590 315 / 3e-101 APL4 Glucose-1-phosphate adenylyltransferase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G146100 [exp] 780 / 0 AT1G05610 529 / 0.0 ADP-glucose pyrophosphorylase small subunit 2 (.1) Potri.014G171800 [exp] 429 / 8e-146 AT5G48300 885 / 0.0 ADP-GLUCOSE PYROPHOSPHORYLASE SMALL SUBUNIT 1, ADP glucose pyrophosphorylase 1 (.1) Potri.014G110000 [exp] 330 / 4e-107 AT1G27680 737 / 0.0 ADPGLC-PPase large subunit (.1) Potri.004G157100 [exp] 322 / 4e-104 AT4G39210 808 / 0.0 Glucose-1-phosphate adenylyltransferase family protein (.1) Potri.008G195100 [exp] 322 / 6e-104 AT5G19220 801 / 0.0 ADP GLUCOSE PYROPHOSPHORYLASE 2, ADP glucose pyrophosphorylase large subunit 1 (.1) Potri.002G033400 [exp] 321 / 2e-103 AT1G27680 822 / 0.0 ADPGLC-PPase large subunit (.1) Potri.005G229700 [exp] 320 / 5e-103 AT1G27680 810 / 0.0 ADPGLC-PPase large subunit (.1) Potri.009G118800 [exp] 318 / 1e-102 AT4G39210 808 / 0.0 Glucose-1-phosphate adenylyltransferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042456 [exp] 516 / 8e-180 AT1G05610 504 / 4e-176 ADP-glucose pyrophosphorylase small subunit 2 (.1) Lus10026213 [exp] 458 / 9e-158 AT1G05610 437 / 1e-150 ADP-glucose pyrophosphorylase small subunit 2 (.1) Lus10025187 [exp] 429 / 7e-146 AT5G48300 895 / 0.0 ADP-GLUCOSE PYROPHOSPHORYLASE SMALL SUBUNIT 1, ADP glucose pyrophosphorylase 1 (.1) Lus10016069 [exp] 429 / 9e-146 AT5G48300 895 / 0.0 ADP-GLUCOSE PYROPHOSPHORYLASE SMALL SUBUNIT 1, ADP glucose pyrophosphorylase 1 (.1) Lus10023553 [exp] 328 / 3e-106 AT4G39210 730 / 0.0 Glucose-1-phosphate adenylyltransferase family protein (.1) Lus10034053 [exp] 325 / 1e-104 AT5G19220 832 / 0.0 ADP GLUCOSE PYROPHOSPHORYLASE 2, ADP glucose pyrophosphorylase large subunit 1 (.1) Lus10007209 [exp] 322 / 7e-104 AT1G27680 715 / 0.0 ADPGLC-PPase large subunit (.1) Lus10010088 [exp] 316 / 1e-101 AT1G27680 697 / 0.0 ADPGLC-PPase large subunit (.1) Lus10010515 [exp] 311 / 1e-99 AT5G19220 827 / 0.0 ADP GLUCOSE PYROPHOSPHORYLASE 2, ADP glucose pyrophosphorylase large subunit 1 (.1) Lus10040437 [exp] 304 / 2e-97 AT4G39210 697 / 0.0 Glucose-1-phosphate adenylyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF00483 [poplar] [flax] NTP_transferase Nucleotidyl transferase
Representative CDS sequence Show only first row Show all	>Potri.017G001700.1 pacid=42813990 polypeptide=Potri.017G001700.1.p locus=Potri.017G001700 ID=Potri.017G001700.1.v4.1 annot-version=v4.1 ATGCAAGGAAGATTTATCTTTTTTCATAGCCGCTTGGAAGAAATGAAAATATTCTCTTCCATTAGTCTCTATATACCTTGTAAGATCATAATTTTGATTA AGGGTTCATCTTCATTCATTGATACATCATACAGTCAATTGTTCTCTATTGACATGGTGATATTGCAGCTTTCTAGTTCCAACCCTGTAAATCCCCAAGC AAAGCATTCCATCCTTGAATTGGCTCGTAGTCGTCGAAAACACTTGTCAACTTTCTCTTCTTTCTCTTTGCCAAGTTTGTTCATATCCAATTCTCAGCAA CCTCAAAATCCCATATCATCATTCCCTCAAGTAAATCAGAGTGTTGCAGCTATTGTATTTGGAGATGGATCAGAGTCAAGGCTCTATCCATTGACAAAAA GAAGATCAGAAGGCGCCATTCCCATAGGAGCAAATTACAGAATCGTTGATGCAGTTATTAGCAACTGTATTAACAGTAACATAAACAAGATATATGCTCT AACACAATATAATTCTACTTCTCTCAATTCTCACCTCTCTAGAGCATATGCTGGCTTAGGCCTCGGCAAAGACGGGTTTGTTGAAGTGATTGCAGCATAT CAGAGTCTAGAAGACCAAGGCTGGTTTCAGGGAACTGCTGATGCTATGAGAAGGTGCTTGTGGGTACTGGAAGAGTACCCAGTGTCTGAGTTTCTGGTCC TTCCTGGCCACCATCTCTACAGAATGGACTACCAGAAACTAGTAAAGGCCCATCGAAGTAGCCAGGCCGATATAACCATTGCAGCTTTGAATTCAATAAG AGATCAAGATCCTGGTTTTGGCATATTAAAAGTGAATTCTCTAAATGAAGTTACAGAGTTCGATGTGAAGTCAGAGAGGGCAGTCCAAAGTTCCCAAGCA TTCAATGATAATGGTTATAGGGAGCTATCCAGCATGGGGATCTATCTTGTTAATAGAGACATTATGAGCAAGTCTCTAAACGAATACTTCCCCGAGGCAA ATGAATTCGGAACTGAAGTAATACCCGGCGCAATATCGACTGGAATGAAGGTTCAAGCTTATGAATTTGATGGATACTGGGAGGACATGAGTAGCATTGC AGCATTTTATCAAGCAAACATGGAGTGCATAAAGAGATTAAACATGGGATACGACTTCTACGATAAAGATGCTCCTCTATACACCATGCCTCGCTATCTG CCTCCGACTACTGTAACCGATGCTGTCATCACAGAAAGTGTGGTTGGAGATGGTTGTATCCTTAATAGGTGCAAGATCAAAGGAACAGTAGTTGGTATGA GGACAACCATTAGAGAGAAGGCCATAATTGAAGATTCAGTCATCATGGGTTCTGATTTCTATCAAAAAAACTATATCCAAGATGGCAAGGATCAGAAGGG CATGTTGATTCCGATAGGAATTGGCGATGAAACTCGCATAAAGAAAGCTATTGTAGACAAGAATGCAAGGATTGGCAGAAATGTAATGATTATTAACAAA GACAATGTACAAGAATGCAACAGGGAAGCTGATGGCTACATAATCAGTGGAGGAATAGTGGTTGTCCTAGAGAGTGCAGTGATCCCAGATGGCAGCATTT TATGA
AA sequence Show only first row Show all	>Potri.017G001700.1 pacid=42813990 polypeptide=Potri.017G001700.1.p locus=Potri.017G001700 ID=Potri.017G001700.1.v4.1 annot-version=v4.1 MQGRFIFFHSRLEEMKIFSSISLYIPCKIIILIKGSSSFIDTSYSQLFSIDMVILQLSSSNPVNPQAKHSILELARSRRKHLSTFSSFSLPSLFISNSQQ PQNPISSFPQVNQSVAAIVFGDGSESRLYPLTKRRSEGAIPIGANYRIVDAVISNCINSNINKIYALTQYNSTSLNSHLSRAYAGLGLGKDGFVEVIAAY QSLEDQGWFQGTADAMRRCLWVLEEYPVSEFLVLPGHHLYRMDYQKLVKAHRSSQADITIAALNSIRDQDPGFGILKVNSLNEVTEFDVKSERAVQSSQA FNDNGYRELSSMGIYLVNRDIMSKSLNEYFPEANEFGTEVIPGAISTGMKVQAYEFDGYWEDMSSIAAFYQANMECIKRLNMGYDFYDKDAPLYTMPRYL PPTTVTDAVITESVVGDGCILNRCKIKGTVVGMRTTIREKAIIEDSVIMGSDFYQKNYIQDGKDQKGMLIPIGIGDETRIKKAIVDKNARIGRNVMIINK DNVQECNREADGYIISGGIVVVLESAVIPDGSIL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G05610		APS2	ADP-glucose pyrophosphorylase ...		Potri.017G001700 [exp]	0	1
AT5G62960			unknown protein		Potri.012G082400 [exp]	4.00	0.7640
AT3G62800		DRB4	double-stranded-RNA-binding pr...		Potri.019G038100 [exp]	9.38	0.7329
AT1G03687			DTW domain-containing protein ...		Potri.013G132100 [exp]	10.81	0.7531
					Potri.003G169500 [exp]	11.31	0.6133
AT1G49180			protein kinase family protein ...		Potri.019G011300 [exp]	11.48	0.7213
AT1G68585			unknown protein		Potri.015G053600 [exp]	16.15	0.7090
AT5G22850			Eukaryotic aspartyl protease f...		Potri.001G213600 [exp]	17.66	0.6916
AT1G54870			NAD(P)-binding Rossmann-fold s...		Potri.019G023900 [exp]	28.46	0.7047
AT3G55960			Haloacid dehalogenase-like hyd...		Potri.016G116700 [exp]	40.00	0.6214
AT5G15150	HD	ATHB3, HAT7, AT...	HOMEOBOX FROM ARABIDOPSIS THAL...		Potri.008G194400 [exp]	40.74	0.6704

Compare expression of checked genes

Potri.017G001700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.