Plant FIBer expression Database

Potri.017G001900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G59890 457 / 1e-162 Dihydrodipicolinate reductase, bacterial/plant (.1.2)
AT2G44040 447 / 7e-159 Dihydrodipicolinate reductase, bacterial/plant (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G145900
[exp]
566 / 0 AT3G59890 445 / 2e-157 Dihydrodipicolinate reductase, bacterial/plant (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10024047
[exp]
441 / 9e-157 AT2G44040 460 / 7e-164 Dihydrodipicolinate reductase, bacterial/plant (.1)
Lus10041701
[exp]
440 / 5e-156 AT2G44040 460 / 1e-163 Dihydrodipicolinate reductase, bacterial/plant (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0063 NADP_Rossmann PF01113 DapB_N Dihydrodipicolinate reductase, N-terminus
CL0139 GADPH_aa-bio_dh PF05173 DapB_C Dihydrodipicolinate reductase, C-terminus
Representative CDS sequence
>Potri.017G001900.1 pacid=42814027 polypeptide=Potri.017G001900.1.p locus=Potri.017G001900 ID=Potri.017G001900.1.v4.1 annot-version=v4.1
ATGTGGATTCAAGGTGCAGTGCTTTATGAACCATTGAAACCACTCTATCTTAGCAACCCACTTAGCTTTAATGGAACTAGTTTCTTCACCAACCATTATC
AGAAACGGAGATCTTCTGTGGTTGTAATGTCCACGACAACCAAAAGTACTGCAGTTCCTATCATGGTAAATGGCTGTAATGGAAAAATGGGGAGTTCTGT
TATATTGGCAGCGAATTCTGCTGGACTTCAAATTCTTCCAAAATCATTTGGCCCGGAAAAGGAGGCTGGTAATACTGTGGAAGTTTTTGGGAATGAGATT
AAAATTCATGGTCCTTCTGAAAGAGAAAGTGTGCTTGCGTCCCTCTATGATGAGTATCCGAGCATGATTGTGGTGGATTACACTGTGCCTGATTTGGTGA
ATGATAATGCAGATCTGTATTGCAGAGTTGGGGTGCCATTTGTGATGGGAACTACTGGTGGCGATAGGGATATATTATATAAGACTGTGGATGCCTCAAA
AGTTTATGCAGTAATCTCTCCACAAATGGGGAAACAGGTGGTTGCATTTCTTGCAGCCATGGAGATTATGGCTGAGCAATTTCCTGGTGCATTCTCTGGA
TACTCCCTTCATGTGAAGGAGTCCCATCAAGCAGGAAAGCTGGACACGTCTGGAACTGCCAAGGCTGTCATTTCTTGCTTCAAGAAATTGGGGGTGTCTT
TTGATGATCAGATAGAAATGATCCGAGATCCCAAGGAACAAGTGGAGTTGGTGGGAGTTCCAGAGGAGTATTTGTCTGGTCATGCATTTCATTTGTATTA
TCTGTCGTCACCTGATAAAACTGTTTCATTTGAGTTTCAACATAATGTGTGCGGTAGATCAATCTATGCTGAGGGTACAGTTGATGCTGTACTTTTCCTT
GCTAAGAAGATTCAATCAAAGGCTGACAAGCGGATCTACAATATGATTGATGTCTTGCGGGAGGGTAACATGAGATAA
AA sequence
>Potri.017G001900.1 pacid=42814027 polypeptide=Potri.017G001900.1.p locus=Potri.017G001900 ID=Potri.017G001900.1.v4.1 annot-version=v4.1
MWIQGAVLYEPLKPLYLSNPLSFNGTSFFTNHYQKRRSSVVVMSTTTKSTAVPIMVNGCNGKMGSSVILAANSAGLQILPKSFGPEKEAGNTVEVFGNEI
KIHGPSERESVLASLYDEYPSMIVVDYTVPDLVNDNADLYCRVGVPFVMGTTGGDRDILYKTVDASKVYAVISPQMGKQVVAFLAAMEIMAEQFPGAFSG
YSLHVKESHQAGKLDTSGTAKAVISCFKKLGVSFDDQIEMIRDPKEQVELVGVPEEYLSGHAFHLYYLSSPDKTVSFEFQHNVCGRSIYAEGTVDAVLFL
AKKIQSKADKRIYNMIDVLREGNMR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G59890 Dihydrodipicolinate reductase,... Potri.017G001900
[exp]
0 1
AT1G19880 Regulator of chromosome conden... Potri.002G025600
[exp]
6.32 0.7649
AT3G19360 C3HZnF Zinc finger (CCCH-type) family... Potri.004G169500
[exp]
7.14 0.7672
AT4G34110 PABP2, PAB2, AT... ARABIDOPSIS POLY\(A\) BINDING ... Potri.009G099300
[exp]
9.94 0.7407
AT1G80410 OMA, EMB2753 OMISHA, EMBRYO DEFECTIVE 2753,... Potri.001G177700
[exp]
10.24 0.7920
AT5G52470 ATFIB1, ATFBR1,... SKP1/ASK1-INTERACTING PROTEIN,... Potri.015G147500
[exp]
18.60 0.7741
AT3G07930 DNA glycosylase superfamily pr... Potri.014G187000
[exp]
19.07 0.7555
AT1G25220 WEI7, TRP4, ASB... WEAK ETHYLENE INSENSITIVE7, TR... Potri.010G102200
[exp]
22.91 0.7102 ASB1,Pt-TRP4.2
AT2G19430 DWA1, AtTHO6 DWD (DDB1-binding WD40 protein... Potri.007G001500
[exp]
26.53 0.7268
AT5G67240 SDN3 small RNA degrading nuclease 3... Potri.007G048000
[exp]
28.26 0.7316
AT3G17465 RPL3P ribosomal protein L3 plastid (... Potri.008G207000
[exp]
29.39 0.7576 RPL3.2

Potri.017G001900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.