Plant FIBer expression Database

Pt-TEJ.2 (Potri.017G002000) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol Pt-TEJ.2
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G31870 615 / 0 PARG1, TEJ Sanskrit for 'bright', poly\(ADP-ribose\) glycohydrolase 1, Poly (ADP-ribose) glycohydrolase (PARG) (.1), Poly (ADP-ribose) glycohydrolase (PARG) (.2)
AT2G31865 536 / 0 PARG2 poly(ADP-ribose) glycohydrolase 2 (.1), poly(ADP-ribose) glycohydrolase 2 (.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G145800
[exp]
883 / 0 AT2G31870 588 / 0.0 Sanskrit for 'bright', poly\(ADP-ribose\) glycohydrolase 1, Poly (ADP-ribose) glycohydrolase (PARG) (.1), Poly (ADP-ribose) glycohydrolase (PARG) (.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10020902
[exp]
655 / 0 AT2G31870 655 / 0.0 Sanskrit for 'bright', poly\(ADP-ribose\) glycohydrolase 1, Poly (ADP-ribose) glycohydrolase (PARG) (.1), Poly (ADP-ribose) glycohydrolase (PARG) (.2)
Lus10033474
[exp]
645 / 0 AT2G31870 653 / 0.0 Sanskrit for 'bright', poly\(ADP-ribose\) glycohydrolase 1, Poly (ADP-ribose) glycohydrolase (PARG) (.1), Poly (ADP-ribose) glycohydrolase (PARG) (.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0223 MACRO PF05028 PARG_cat Poly (ADP-ribose) glycohydrolase (PARG)
Representative CDS sequence
>Potri.017G002000.1 pacid=42812846 polypeptide=Potri.017G002000.1.p locus=Potri.017G002000 ID=Potri.017G002000.1.v4.1 annot-version=v4.1
ATGGAGGGAATGGAGAACAGAGAAGACTTGAAGTCGATGCTACCGTTTCTGCCTTTACTACTTGGCTCATCAAATCTGTTTTGGCCATCCCAAGTGGTTA
AATCACTCGAAACCCTCTCAAAAGGACCTCTTTACAGCAAAGTTGACTCAGGTGAACTGCTTTTCGATGCCATTTCCCATATCAGAGATTCTCTTGCTCT
CCCTTCTCTGCAACCTGTCGCTCCTTTTGCCCATGGAGGTTATGCTCTCTTCTTTGACGAGCTAATTTCCCGGGCAGAGGCTTCAAAATGGTTTGAAGAG
GTTGTCCCAGCGTTGGCTAACTTGCTCTTGAGATTGCCATCTCTTTTAGAGTCTCACTATCAAGATGCTGATTACTTGTTTAATGGTGTCAGAACTGGCC
TTCGCTTGTTGGGTTCACAAGAAGCTGGCATAGTGTTCCTTGGCCAGGAATTGGTTGCTGCTCTCCTCACATGTGCGTTCTTTTGTTTGTTTCCAGTCTC
TGATAGAGGTTCAAAACGTCTTCCAACAATAAATTTTGATCATTTGTTTGAGGATATATATGATGAGGGTTACAGAAAAAAGCAGGAGAACAAAATAAAG
TGTATTATGCATTATTTTGAAAGGATATGTTCATCTATGCCTGAGGGCTTTGTCTCCTTTGAGAGGAAGGTTCTTCCTTTAGAACAACTTCCTTTGTGTG
TTTCTTATCCCGAGGCAGATTTTTGGAGCAAATCTGTTGTTTCTCTCTGCCCTTTTGAGGTCCATAGTTCAGGCTTCATAGAAGACCAATCCAATGGAGC
TCTTGAAGTTGATTTTGCTAACAAGTATCTCGGAGGTGGTGCTCTTCGTAGTGGCTGCTTGCAGGAAGAGATACGGTTCATGATCAATCCTGAGTTAATT
GCTGGAATGCTTTTCTTACCTTGCATGGAAGACAATGAGGCGATTGAAATTGTTGGTGCTGAAAGATTCTCAAACTACACAGGGTACGCCTCTTCTTTTT
GTTTTTCTGGTGACCATGTGGACAAAAGGAATGTTGATGGTTTCAGAAGATGTAAAACCAGGATTGTTGCCATTGATGCATTATGCAGGGCAGGGATGAG
ACAATATAAGTGCACATACCTGCTTCGGGAGGCTAACAAGGCATTCTGTGGCTTTTTGGATCAATCTAATTGTGACCATCACAAAAGCCTGTTTCAAGAT
GGTGGCTCACAAGGTTCTCAGTGTATGGAAACTGATAAAGACACTAATGTTGTGGTGAAGGACTTTCCGATGGATGAAGCCCCCTCAACTTCTGTTGAAA
TTGCAATGAACAGAGGAGAATATATAAACCAAGTGATCGGATATTCTGACAAGAAGGGTAGTTGGTGTCTTGACCTTGAAGATAAAATCGGTATTGCTAC
AGGGAATTGGGGGTGCGGAGCTTTTGGTGGAGATCCTGAACTAAAGACCATGATTCAGTGGCTTGCAGCTTCCCAGGCAGCAAGACGTTCTGTTTCGTAC
TATGCATTAGGCATTAAATCGTTGCAGAACCTGAATCAGGTGAGTCAATGGATTCTGTCACATGAATGGACGGTGGGAGACCTTTGGAATATGTTGGTGG
AGTACTCTTCTCGGAGATTCAACAAGGAAACTAACTTGGGTTTCTTTGCATGGTTGCTTCCTACGCTATTTGCTCATGATGCTAAGATGTCAAATTTGAC
AAGTACACCTTAA
AA sequence
>Potri.017G002000.1 pacid=42812846 polypeptide=Potri.017G002000.1.p locus=Potri.017G002000 ID=Potri.017G002000.1.v4.1 annot-version=v4.1
MEGMENREDLKSMLPFLPLLLGSSNLFWPSQVVKSLETLSKGPLYSKVDSGELLFDAISHIRDSLALPSLQPVAPFAHGGYALFFDELISRAEASKWFEE
VVPALANLLLRLPSLLESHYQDADYLFNGVRTGLRLLGSQEAGIVFLGQELVAALLTCAFFCLFPVSDRGSKRLPTINFDHLFEDIYDEGYRKKQENKIK
CIMHYFERICSSMPEGFVSFERKVLPLEQLPLCVSYPEADFWSKSVVSLCPFEVHSSGFIEDQSNGALEVDFANKYLGGGALRSGCLQEEIRFMINPELI
AGMLFLPCMEDNEAIEIVGAERFSNYTGYASSFCFSGDHVDKRNVDGFRRCKTRIVAIDALCRAGMRQYKCTYLLREANKAFCGFLDQSNCDHHKSLFQD
GGSQGSQCMETDKDTNVVVKDFPMDEAPSTSVEIAMNRGEYINQVIGYSDKKGSWCLDLEDKIGIATGNWGCGAFGGDPELKTMIQWLAASQAARRSVSY
YALGIKSLQNLNQVSQWILSHEWTVGDLWNMLVEYSSRRFNKETNLGFFAWLLPTLFAHDAKMSNLTSTP

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G31870 PARG1, TEJ Sanskrit for 'bright', poly\(A... Potri.017G002000
[exp]
0 1 Pt-TEJ.2
AT1G56170 CCAAT NF-YC2, ATHAP5B... "nuclear factor Y, subunit C2"... Potri.007G070900
[exp]
2.00 0.8558
AT3G03740 ATBPM4 BTB-POZ and MATH domain 4 (.1) Potri.009G156500
[exp]
4.89 0.8738
AT1G66510 AAR2 protein family (.1.2.3) Potri.017G123900
[exp]
5.29 0.8877
AT1G35660 unknown protein Potri.019G083100
[exp]
9.48 0.8601
AT3G19610 Plant protein of unknown funct... Potri.001G294600
[exp]
10.58 0.8082
AT3G03310 ATLCAT3 ARABIDOPSIS LECITHIN:CHOLESTER... Potri.008G076300
[exp]
10.95 0.7823
AT5G27240 DNAJ heat shock N-terminal dom... Potri.005G043200
[exp]
11.40 0.8212
Potri.002G154150
[exp]
16.30 0.8355
AT3G07150 unknown protein Potri.002G244400
[exp]
16.79 0.8418
AT1G50440 RING/FYVE/PHD zinc finger supe... Potri.008G005800
[exp]
19.07 0.7887

Potri.017G002000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.