Plant FIBer expression Database

Potri.017G002100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G59880 59 / 2e-12 unknown protein
AT2G44010 52 / 8e-10 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G145500
[exp]
162 / 2e-53 AT3G59880 55 / 8e-11 unknown protein
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.017G002100.1 pacid=42814626 polypeptide=Potri.017G002100.1.p locus=Potri.017G002100 ID=Potri.017G002100.1.v4.1 annot-version=v4.1
ATGGAGGGACTCATTCCTTTGGTCTGCAAAGCTTTCAGGAAGAACAAAACTCGGAGGCAATATGAGTGTCTTTCAGTTGGTGCTGCACTAAGTTACAACA
TCTCAGATTTCTACACTCACGAGGCACCTAAAAGTGAGCTACATTTCCAACCATCCATGGAGAACACAAATTCTCAGAAAAAAGTTCATCGGAGATTTTG
GTCTGTTCATGAAGATTTCTCAGGTGGATTTTCGTCACCGGCAGTTCGTTCCACAACTGCTGCTTCTCCTCAAACAAAGCAGCTTGCGAGGTTCAGGAGC
CAAAGAGTTTAG
AA sequence
>Potri.017G002100.1 pacid=42814626 polypeptide=Potri.017G002100.1.p locus=Potri.017G002100 ID=Potri.017G002100.1.v4.1 annot-version=v4.1
MEGLIPLVCKAFRKNKTRRQYECLSVGAALSYNISDFYTHEAPKSELHFQPSMENTNSQKKVHRRFWSVHEDFSGGFSSPAVRSTTAASPQTKQLARFRS
QRV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G59880 unknown protein Potri.017G002100
[exp]
0 1
AT2G38970 Zinc finger (C3HC4-type RING f... Potri.003G148400
[exp]
2.23 0.8378
AT2G16720 MYB AtY49, AtMYB7 ARABIDOPSIS THALIANA MYB DOMAI... Potri.014G100800
[exp]
2.44 0.8415 MYB201
AT1G27100 Actin cross-linking protein (.... Potri.004G130200
[exp]
5.19 0.8590
AT3G01420 PADOX-1, ALPHA-... plant alpha dioxygenase 1, alp... Potri.008G106400
[exp]
5.47 0.8182 Pt-PIOX.1
AT1G30755 Protein of unknown function (D... Potri.002G021400
[exp]
7.07 0.8492
AT5G40010 ASD, AATP1 ATPase-in-Seed-Development, AA... Potri.019G020800
[exp]
9.59 0.8112
AT3G10260 Reticulon family protein (.1.2... Potri.002G055600
[exp]
11.83 0.8212
AT1G12740 CYP87A2 "cytochrome P450, family 87, s... Potri.001G270500
[exp]
18.97 0.8205
AT1G74360 Leucine-rich repeat protein ki... Potri.015G061600
[exp]
20.83 0.8365
AT2G01170 BAT1 bidirectional amino acid trans... Potri.010G119100
[exp]
21.81 0.8404

Potri.017G002100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.