Plant FIBer expression Database

Potri.017G002200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G43990 246 / 3e-72 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G145400
[exp]
907 / 0 AT2G43990 252 / 3e-74 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10008351
[exp]
126 / 2e-30 AT2G43990 93 / 1e-19 unknown protein
Lus10027108
[exp]
124 / 2e-30 AT2G43990 95 / 8e-21 unknown protein
Lus10027992
[exp]
93 / 1e-19 AT2G43990 86 / 1e-17 unknown protein
Lus10008165
[exp]
83 / 1e-16 AT2G43990 74 / 3e-14 unknown protein
PFAM info
Representative CDS sequence
>Potri.017G002200.1 pacid=42813653 polypeptide=Potri.017G002200.1.p locus=Potri.017G002200 ID=Potri.017G002200.1.v4.1 annot-version=v4.1
ATGAACCAATCATCATCAAAAACCCACAACCAAAAATGCCCATCTGCAGCATTACCAGAACAACCCACCAAGACTCGAAGGAGAAAGAAACAGCAGCATC
ATCAGCCAAGTTTTAGAAGAAACCCACTTCAAGATCTCAACAATGGTGGCATTGACACCACCAGCATTGACAATAGCAGCAATGCTTCTTCTTTATCCTC
CATTGAAGCTCCTAGGGGCTGTCTCAGGTTCCTTCTCTCTCACTCTTCTTCCTCTTCCAGTTCTGCAAAAACCCCTTTTAGTAGTAGTACTAGTAATAAT
CAAAGACTGACAAAAGTAAAGCCCTCGAGAACTCCTAAGTCAGCTCCTAGTATGAGACCCACGAAGGAGAAACCCATTTCAAAAAAGGTGGAGAAGGAGA
AGAGAAACCACCCGCCATGTCTATACCAGTGGCAATCTGGTAAAAAACGCGCTTCCTCTAGGAATGAAGTTGGTGGTTCTAAAGTCTCTTCCTTTTTGGA
GTCAAGTAGCAGTCTTGTGAAAAATAAGCTGAAATCTGGGCCTGGAGAGTTAAAAAGGGTGATGATCGATGGAGTTTGTGAGGGTAGTGGAGCCAATTTG
ACTCCTTTGTGTAAAGTGGGAAGCGGGTCTGGTTTGAACTTAGGAGTTGGTGGTAAGGTTATGAATGATGATTGTTATGAGAAATCATCAAACGGTAAAG
CTGAGTCAAACTCGACAAGTAGCAATACCAAGACCCCTCCAGTTCAGCCCTCAGTATCACCAGAGATACAATGTGGGTCATCTATGAAGTTGATGACAGT
GGAAACGCTTACTCCTGCTACTTGTTATGGTGCTGGTCATGTTGTGTCTGGGGTTACTGACAAGAGGAAATGTAGGCCTAGAGGGATACTCGCAGGAGGA
GAAGCTAAAGCTCTTGGTAGTTTTGATAGCGATGATGATATTGAACAAGCGAATGATGTAGGGCTTATCGAAAATTCTGATGTTTCTATGTTGCCTTTGC
CTATTGACGCTTCAATGCATTGGCTTTTATCACCTTGTGATGAGAAGGATGAGGGTCAGAAGGAGAATTCTCGGAACGGGTCACGCCGTTTTAGGAGATT
GGAGGAGCGTGCCATACACAACTCTCCTGCTTCACCTTCATCTGGCTATGGTGGTTTTTCACCGGAGTTGTGCAATACCAGTGCGAACAGGAGTATTTCT
ACTATTAGTGCTGGGAGGAGGAGTGCTTCTTTGCTTTCTCCCAGTGCGCTCCCTGTCCCTCAGTTTCAAGGATTTCTGGGAACTCCTTTATGCGATAACT
TTCCCGTTTCATCTTTAGAAGAAGAGACGGAGAATCGACATTGCACTGATGCAGAGAATTCTCCATTCTCCATAGGCTCGTTGGGTAGTGGAAATATAAT
TCAAACTCCCCAATCTGATACTAGCTGTGATAGACGAGTCGGTAACTTTGATTCTGATCTCAATTCAGTGGCTGGGCAGCTTCAGATGACTAGTTTATCT
CCCATGAGCCATGCGTCAGTATGGGATCCAACCAATTCAAGTTTCCGGTTTGATTCTCTGACCATGCCTTCCAATTCAGTCGATCTTTCCAAGTTTCACA
AAATTTTGGAAGAACGGAATTCTTGGTTTTCTAATTCTACAGCCGAGAATGTATCACAATCTCAGATGAGAATATCTTGGAGGGAAGGGTTGGTGAGTCG
TATGTTTGAGATGGATGAGTTTGATTGTTGTAGATACTTGTCTGATGAAGAGGATGATGGCAATGTCCGCAATACTGATTGCTTAAAATCTCATAAGAGT
CCTCAGCTCAACGTTGAGGCCGCAACGGATCGCATTTCAATTAATGGTATTGGGTCTACTGAATTTGTAAAGACGGAACAGGATACAGGTGGCAAAACCA
AGGATGGCCTCCCTTCTCAACCACCATGTTCGTGTGCAGAGTCCATAAGCACCGATGGAGGTGGTCTTGTTCGTTCAGATGATTCAGATTGGACCCTATG
CTACAAGAACCATTTGTTTCAAGCATAA
AA sequence
>Potri.017G002200.1 pacid=42813653 polypeptide=Potri.017G002200.1.p locus=Potri.017G002200 ID=Potri.017G002200.1.v4.1 annot-version=v4.1
MNQSSSKTHNQKCPSAALPEQPTKTRRRKKQQHHQPSFRRNPLQDLNNGGIDTTSIDNSSNASSLSSIEAPRGCLRFLLSHSSSSSSSAKTPFSSSTSNN
QRLTKVKPSRTPKSAPSMRPTKEKPISKKVEKEKRNHPPCLYQWQSGKKRASSRNEVGGSKVSSFLESSSSLVKNKLKSGPGELKRVMIDGVCEGSGANL
TPLCKVGSGSGLNLGVGGKVMNDDCYEKSSNGKAESNSTSSNTKTPPVQPSVSPEIQCGSSMKLMTVETLTPATCYGAGHVVSGVTDKRKCRPRGILAGG
EAKALGSFDSDDDIEQANDVGLIENSDVSMLPLPIDASMHWLLSPCDEKDEGQKENSRNGSRRFRRLEERAIHNSPASPSSGYGGFSPELCNTSANRSIS
TISAGRRSASLLSPSALPVPQFQGFLGTPLCDNFPVSSLEEETENRHCTDAENSPFSIGSLGSGNIIQTPQSDTSCDRRVGNFDSDLNSVAGQLQMTSLS
PMSHASVWDPTNSSFRFDSLTMPSNSVDLSKFHKILEERNSWFSNSTAENVSQSQMRISWREGLVSRMFEMDEFDCCRYLSDEEDDGNVRNTDCLKSHKS
PQLNVEAATDRISINGIGSTEFVKTEQDTGGKTKDGLPSQPPCSCAESISTDGGGLVRSDDSDWTLCYKNHLFQA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G43990 unknown protein Potri.017G002200
[exp]
0 1
AT3G53320 unknown protein Potri.006G131650
[exp]
27.27 0.8219
AT5G25830 GATA GATA12 GATA transcription factor 12 (... Potri.018G044900
[exp]
39.00 0.7569
AT3G19820 CBB1, EVE1, DW1... ENHANCED VERY-LOW-FLUENCE RESP... Potri.008G084800
[exp]
43.26 0.8109 DIM.2
AT4G11820 FKP1, EMB2778, ... FLAKY POLLEN 1, hydroxymethylg... Potri.003G120400
[exp]
46.49 0.7620
AT3G57060 binding (.1.2) Potri.006G041500
[exp]
48.37 0.8042
AT3G63130 ATRANGAP1, RANG... RAN GTPASE-ACTIVATING PROTEIN ... Potri.005G209600
[exp]
48.74 0.8101 Pt-RANGAP1.1
AT3G18730 BRU1, MGO3, TSK TONSOKU, MGOUN3, BRUSHY1, tetr... Potri.007G110800
[exp]
49.56 0.8029
AT2G41620 Nucleoporin interacting compon... Potri.015G026200
[exp]
53.44 0.7945
AT5G52840 NADH-ubiquinone oxidoreductase... Potri.017G149100
[exp]
60.62 0.7975
AT1G53140 DRP5A Dynamin related protein 5A (.1... Potri.011G118500
[exp]
63.46 0.8004

Potri.017G002200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.