Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01050 69 / 8e-13 zinc ion binding;nucleic acid binding (.1) AT2G07760 65 / 2e-11 Zinc knuckle (CCHC-type) family protein (.1) AT5G32613 54 / 6e-08 Zinc knuckle (CCHC-type) family protein (.1) AT5G28823 45 / 4e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G002800 [exp] 589 / 0 AT2G01050 68 / 2e-12 zinc ion binding;nucleic acid binding (.1) Potri.017G002501 [exp] 484 / 3e-173 AT2G01050 73 / 3e-14 zinc ion binding;nucleic acid binding (.1) Potri.003G047101 [exp] 59 / 9e-11 AT2G01050 55 / 8e-10 zinc ion binding;nucleic acid binding (.1) Potri.019G047850 [exp] 48 / 2e-06 AT2G01050 46 / 8e-06 zinc ion binding;nucleic acid binding (.1)
Flax homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF14111 [poplar] [flax] DUF4283 Domain of unknown function (DUF4283)
Representative CDS sequence Show only first row Show all	>Potri.017G002400.1 pacid=42812995 polypeptide=Potri.017G002400.1.p locus=Potri.017G002400 ID=Potri.017G002400.1.v4.1 annot-version=v4.1 ATGGAATTGAAGTTCGTAGAACCCGTGGCCAAGAATGGAAAGGAATTGGCTCAAGTTAATGAAGAGGATGTTGCGTCGGAGTTTAAAAGATGGGAAAACG CTGTGGTTGCTTATTTTCTTGGCCATGATTCAACCTTCGGTCCAACTTCTTTCAACAAGTTTATCAACAATTTAATCGACTCGGAGTGGAGAAAATATGG GAATGTTAAGGTATATTCACAAGGGTCAGGAGTTTTTGTCTTGGATTTTGAATCTGCTCATGGCAAGGAGTTGGCATTGGGTGAGGGTCCAAGGTTTTAT GATGGTAGTAAACCTTTTATTTTAAAGCCATGGAGTCGTGATCTGAGTTTGGAAATCAAAGAGTTGAAGTCAGCACCGATTTGGATTAAGTTACCGAATC TGAGGTTGCATCTGTGGTCTCCTGAGGCACTTAGTAAGATTGCAAGTTTGGTGGGCAGACCTTTGTTTGCTGATACAGTGACAGCATCAAGAGAGACGTT ATGCTTTGCAAGAGTTTGTGTCGAAGTGGATTTTGATAAGATGTTACCTGATTCAGTCACCATTGAGGATGACAAGGGCTACAGCTATGATCAAAAGGTT GAGTATGAATGGCAGCCCACATCTAGATGCTCCTATTGTCTGCACCTTGGGCATTCTGATTCTTGTCCAAGACGCAAAACGACTTTCCCATGCTCGTGCT GCAAGGAATATGGACGTTTCTGCTGTAAGCGAAGCTGTGGCCCTCCCAGGATTCTGTTTGGGACAGCACAAGGTGCTGCAAATACTTCGTCTAAGACAGC ATTCGGTTCAACTCCTGCAATGTTTGCTGATGAAGCCCCAGTATTTGGTGCAAACTTTTCGTCCACTCCAGCATTTAGTTCAACTCCTGCTTCAACATTT GGTTCCACTCTGTTTAGTACAACTGCTCCTGGTGCTAACAGTCCAGAGGATGATGCAAGGACTTCTTTGTCTACTCCAGCATTTGGTTCAGCGCTTCCTG CTGAATAA
AA sequence Show only first row Show all	>Potri.017G002400.1 pacid=42812995 polypeptide=Potri.017G002400.1.p locus=Potri.017G002400 ID=Potri.017G002400.1.v4.1 annot-version=v4.1 MELKFVEPVAKNGKELAQVNEEDVASEFKRWENAVVAYFLGHDSTFGPTSFNKFINNLIDSEWRKYGNVKVYSQGSGVFVLDFESAHGKELALGEGPRFY DGSKPFILKPWSRDLSLEIKELKSAPIWIKLPNLRLHLWSPEALSKIASLVGRPLFADTVTASRETLCFARVCVEVDFDKMLPDSVTIEDDKGYSYDQKV EYEWQPTSRCSYCLHLGHSDSCPRRKTTFPCSCCKEYGRFCCKRSCGPPRILFGTAQGAANTSSKTAFGSTPAMFADEAPVFGANFSSTPAFSSTPASTF GSTLFSTTAPGANSPEDDARTSLSTPAFGSALPAE

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G01050			zinc ion binding;nucleic acid ...		Potri.017G002400 [exp]	0	1
AT2G01050			zinc ion binding;nucleic acid ...		Potri.017G002501 [exp]	1.41	0.9340
AT5G38700			unknown protein		Potri.014G123400 [exp]	2.82	0.8338
AT4G25480	AP2_ERF	CBF3, DREB1A, A...	C-REPEAT BINDING FACTOR 3, de...		Potri.009G147700 [exp]	2.82	0.7506
AT5G52020	AP2_ERF		Integrase-type DNA-binding sup...		Potri.001G110500 [exp]	5.29	0.7527	DREB65
AT5G38200			Class I glutamine amidotransfe...		Potri.010G120600 [exp]	5.91	0.7853
AT4G24570		DIC2	dicarboxylate carrier 2 (.1)		Potri.017G047800 [exp]	8.94	0.7871
					Potri.018G001700 [exp]	9.16	0.7699
AT1G72790			hydroxyproline-rich glycoprote...		Potri.001G198900 [exp]	10.81	0.7482
AT3G13850	AS2	LBD22	LOB domain-containing protein ...		Potri.001G196400 [exp]	18.81	0.6350	Pt-LBD22.1
AT5G57510			unknown protein		Potri.018G006800 [exp]	21.35	0.6949

Compare expression of checked genes

Potri.017G002400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.