Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01050 69 / 8e-13 zinc ion binding;nucleic acid binding (.1) AT2G07760 64 / 6e-11 Zinc knuckle (CCHC-type) family protein (.1) AT5G32613 52 / 3e-07 Zinc knuckle (CCHC-type) family protein (.1) AT5G28823 45 / 7e-05 unknown protein AT4G37130 43 / 0.0003 hydroxyproline-rich glycoprotein family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G002400 [exp] 610 / 0 AT2G01050 68 / 2e-12 zinc ion binding;nucleic acid binding (.1) Potri.017G002501 [exp] 495 / 6e-178 AT2G01050 73 / 3e-14 zinc ion binding;nucleic acid binding (.1) Potri.003G047101 [exp] 57 / 3e-10 AT2G01050 55 / 8e-10 zinc ion binding;nucleic acid binding (.1) Potri.019G047850 [exp] 49 / 2e-06 AT2G01050 46 / 8e-06 zinc ion binding;nucleic acid binding (.1)
Flax homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF14111 [poplar] [flax] DUF4283 Domain of unknown function (DUF4283)
Representative CDS sequence Show only first row Show all	>Potri.017G002800.1 pacid=42814236 polypeptide=Potri.017G002800.1.p locus=Potri.017G002800 ID=Potri.017G002800.1.v4.1 annot-version=v4.1 ATGGAATTGAAGTTCGTAGAACCTGTGGCCAAGAATGGAAAGGAATTGGCCCTCGTTAATGAAGAGGATGTTGCGTCGGAGTTTAAAAGATGGGAAAACG CTGTGGTTGCCTATTTTCTTGGCCATGATTCAACCTTCGGTCCGCCTTCTTTCAACAAGTTTATCAACAATTTAATCGACTCGGAGTGGAGAAAATATGG GAATGTTAAGGTATATTCACAAGGGTCAGGAGTTTTTGTCTTGGATTTTGAATCTGTTCATGGCAAGGAGTTGGCATTGGGTGAGGGTCCAAGGTTTTAT GATGGTAGGAAACCTTTTATTTTAAAGCCATGGAGTCGTGATATGAGCTTGGAAATCGAAGAGTTGAAGTCAGCACCGATTTGGATTAGGTTACCGAATC TGAGGTTGCATCTGTGGTCTCCTGAGGCACTTGGTAAGATTGCAAGTTTGGTGGGCAGACCTTTGTTTGCTGATACAGTAACAGCATCAAGAGAGACATT GTGCTTTGCAAGAGTTTGTGTCGAAGTGGATTTTGATAAGATGTTACCTGATTCAGTCACCATTGAGGATGACAAGGGCTACAGCTATGATCAAAAGGTT GAGTATGAATGGCAGCCCACATCTAGATGCTCCTATTGTCTGCACCTTGGGCATTCTGATTCTTGTCCAAGACGCAAAACGACTTTCCCATGCTCGTGCT GCAAGGAATATGGACGTTTCTGCAGTAAGCGAAGCGGTGGCCCTGCCAGGTTTCTGTTTGGGACAGCACAAGGTGCTGCAAATACTTCATCTGAGACAAC ATTCGGTTCAACTCCTGCTCCAGCATTTGGTTCAACTCCTGCTCCAGCATTTGGTTCAACTCCTGCTCCTACATTTGGTTCCACTCTGTTTGGTACTACT GCTCCTGGTGCTAACAGTCCACAGGATGATGCAAGGACTTCTTTGTCTACTCCAGCATTTGGTTCAGAGCGTCCTCCTGCTGAATAA
AA sequence Show only first row Show all	>Potri.017G002800.1 pacid=42814236 polypeptide=Potri.017G002800.1.p locus=Potri.017G002800 ID=Potri.017G002800.1.v4.1 annot-version=v4.1 MELKFVEPVAKNGKELALVNEEDVASEFKRWENAVVAYFLGHDSTFGPPSFNKFINNLIDSEWRKYGNVKVYSQGSGVFVLDFESVHGKELALGEGPRFY DGRKPFILKPWSRDMSLEIEELKSAPIWIRLPNLRLHLWSPEALGKIASLVGRPLFADTVTASRETLCFARVCVEVDFDKMLPDSVTIEDDKGYSYDQKV EYEWQPTSRCSYCLHLGHSDSCPRRKTTFPCSCCKEYGRFCSKRSGGPARFLFGTAQGAANTSSETTFGSTPAPAFGSTPAPAFGSTPAPTFGSTLFGTT APGANSPQDDARTSLSTPAFGSERPPAE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G01050			zinc ion binding;nucleic acid ...		Potri.017G002800 [exp]	0	1
AT1G68330			unknown protein		Potri.010G122800 [exp]	7.54	0.6014
AT3G13930			Dihydrolipoamide acetyltransfe...		Potri.001G198000 [exp]	9.16	0.5841
AT3G28345		MDR13, ABCB15	multi-drug resistance 13, ATP-...		Potri.018G141300 [exp]	12.24	0.5829
AT3G61640		AGP20, ATAGP20	arabinogalactan protein 20 (.1...		Potri.012G032000 [exp]	13.52	0.5851
AT2G43980		ATITPK4	"inositol 1,3,4-trisphosphate ...		Potri.007G144701 [exp]	15.36	0.5914
AT5G44250			Protein of unknown function DU...		Potri.002G127600 [exp]	26.83	0.5672
AT2G44100		AT-GDI1, ATGDI1	guanosine nucleotide diphospha...		Potri.007G146600 [exp]	30.00	0.5546	GDI.2
AT3G50390			Transducin/WD40 repeat-like su...		Potri.007G035100 [exp]	39.94	0.5547
AT5G37730			unknown protein		Potri.004G089700 [exp]	43.05	0.5698
					Potri.001G121350 [exp]	48.00	0.5738

Compare expression of checked genes

Potri.017G002800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.