Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48380 454 / 2e-153 BIR1 BAK1-interacting receptor-like kinase 1 (.1) AT3G28450 358 / 2e-116 Leucine-rich repeat protein kinase family protein (.1) AT1G69990 357 / 6e-116 Leucine-rich repeat protein kinase family protein (.1) AT1G27190 345 / 2e-111 Leucine-rich repeat protein kinase family protein (.1) AT5G45780 243 / 3e-72 Leucine-rich repeat protein kinase family protein (.1) AT5G07280 244 / 7e-70 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) AT4G39400 238 / 2e-67 DWF2, CBB2, BIN1, BRI1, ATBRI1 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) AT4G20140 231 / 4e-65 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT2G01950 231 / 5e-65 VH1, BRL2 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) AT4G30520 224 / 7e-65 SARK SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE, Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G004216 [exp] 991 / 0 AT5G48380 412 / 2e-136 BAK1-interacting receptor-like kinase 1 (.1) Potri.017G003251 [exp] 704 / 0 AT5G48380 280 / 1e-88 BAK1-interacting receptor-like kinase 1 (.1) Potri.017G003601 [exp] 611 / 0 AT5G48380 255 / 3e-80 BAK1-interacting receptor-like kinase 1 (.1) Potri.010G177900 [exp] 563 / 0 AT5G48380 731 / 0.0 BAK1-interacting receptor-like kinase 1 (.1) Potri.008G078900 [exp] 558 / 0 AT5G48380 734 / 0.0 BAK1-interacting receptor-like kinase 1 (.1) Potri.010G178050 [exp] 546 / 0 AT5G48380 710 / 0.0 BAK1-interacting receptor-like kinase 1 (.1) Potri.002G240000 [exp] 513 / 2e-176 AT5G48380 721 / 0.0 BAK1-interacting receptor-like kinase 1 (.1) Potri.017G003101 [exp] 419 / 5e-141 AT5G48380 239 / 4e-71 BAK1-interacting receptor-like kinase 1 (.1) Potri.017G004900 [exp] 408 / 3e-138 AT5G48380 262 / 2e-81 BAK1-interacting receptor-like kinase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008743 [exp] 510 / 2e-175 AT5G48380 764 / 0.0 BAK1-interacting receptor-like kinase 1 (.1) Lus10002147 [exp] 490 / 5e-167 AT5G48380 755 / 0.0 BAK1-interacting receptor-like kinase 1 (.1) Lus10030811 [exp] 338 / 1e-108 AT1G27190 772 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10034279 [exp] 256 / 3e-81 AT5G48380 213 / 1e-64 BAK1-interacting receptor-like kinase 1 (.1) Lus10036697 [exp] 229 / 3e-71 AT5G48380 215 / 8e-66 BAK1-interacting receptor-like kinase 1 (.1) Lus10037226 [exp] 228 / 2e-70 AT5G48380 221 / 6e-68 BAK1-interacting receptor-like kinase 1 (.1) Lus10005784 [exp] 242 / 8e-69 AT4G39400 1361 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10020835 [exp] 242 / 9e-69 AT4G39400 1486 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10033533 [exp] 241 / 2e-68 AT4G39400 1492 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10006817 [exp] 234 / 3e-66 AT4G39400 1356 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.017G003800.2 pacid=42814408 polypeptide=Potri.017G003777.1.p locus=Potri.017G003800 ID=Potri.017G003800.2.v4.1 annot-version=v4.1 ATGGCTAATTTTTTTTTTATCTACTCTTTTATGTTCTCCTTGTTAGCTACTTTCACCGTAACTAGTGCTACCGAGACTGACATTTATTGCTTGAAATCTA TTAGGGATTCTATGATAGACCCTAATAATTACTTAAACACCACATGGAATTTCGACAACAAAACAGAAGGTTTCATCTGTAGATTTATGGGAGTCGACTG CTGGCATCCTGATGAGAACAGAGTCTTAAACCTCAGACTCTCTGACCTGGGGCTCATGGGCCAATTCCCTCCTGGCATCCAAAAGTGCACAAGCTTAACT GGTTTGGACCTTTCACATAATGAGCTCCAGGGACCGATTCCATCTGACATCTCTAAAAGGCTACCATACATCACTAACCTTGACCTATCCTTCAACAACT TTTCTGGTGAAATCCCAATAAATATTACCAGTTTATCTTTCTTAAACGATCTAAAACTCGACAACAACAATCTAACAGGTCATATCCCACTAGAAATTGG CCAGCTTGATCGGATCATGGTCTTTACTGTTACTAACAATCGATTATCAGGGCCAGTGCCAAATTTTAGAGGTAATTATATTCCAGCAGACAGCTTTGCG AACAACACAGGACTCTGTGGGAAGCCTTTGGAAAGCTGCTCAATTCATCAAATGAAGTTTGATTACTCATTCAAAAGTGGTTTTGTGATTGGTTATATAG TTTTTTCAACTTCAGTTGCAATTTTTTTTACATCCTGCTGTGTACCATGGAGGAAGCATAAGATAACAGATGATGATCAAGCAGGCAGCTCCCCAACAGG AGGTCTCTTAGAGGAAGGAGTTAAAGAGATTTCCATGTTGGAGAAGAGGGTTACAAGAATGAGCTACGCAGATCTTAATGATGCCACCGATAATTTCAGT GAGAACAATGTCATCGGACAGGGAAAGATGGGGATGCTGTACAAGGCATCATTGCCTAATGGTTATGTCCTTGCAGTGAAGAAGTTGCATGACTCTCAGT TCCTTGAAGAACAATTTATATCCGAGTTGAAGATACTTGGTTCATTGAGACATATCAACGTACTTCCACTGTTGGGGTTTTGCGTTGAGTCAAACCAAAG GTTTCTGGTTTACAATTATATGCCAAATGGTAACCTTTATGATTGGCTACATCCCATGGAAGAAGGTCAGGAAAAAGCTATGGAATGGGGTGTGAGGGTT AAAGTCGCCGTCGGATTAGCAAGAGGCTTGGCATGGCTTCATCAGAACTGTCATACCGTCAAAATAATCCATCTTGACATTAGCTCAAAATGCATATTAC TTGATCAGAACTTCCAGCCCAAGTTATCAAATTTTGGAGAGGCAATGCTCATGAGTTCGACCTGCGCTTCCTCCGTAAATAGTGAGTTTTGGGAGATGGC ATTTGTGAAGGAAGATGTGCATGGATTTGGAGTTGTGCTTCTTGAGATGATTACTGGGGTGGATCCTAGCAACATGACTGCTTCCTCAAACAATGTTCTT AATGAATGGATTGGTCATCTTTCGAGCAGTTCGGATTTTCATGGCGCTATAGACAAGTCTCTGATCGGGCAAGGATTTGACGCTGAGATCGTTCAGCTGC TTAAAGTTGCATGTACCTGTGTTGATCCCATTCCAGATCGAAGACCGATAATGCTTCAAGTGTACGAAGACATAAAACAGGTTTTGAAGTTGTGGGTTTT GGTGGACTTGTTCTTTTGTTTAAATTTTAAAATTGTATTGATTCGGGAAGTAAATTGTAGATTTTAA
AA sequence Show only first row Show all	>Potri.017G003800.2 pacid=42814408 polypeptide=Potri.017G003777.1.p locus=Potri.017G003800 ID=Potri.017G003800.2.v4.1 annot-version=v4.1 MANFFFIYSFMFSLLATFTVTSATETDIYCLKSIRDSMIDPNNYLNTTWNFDNKTEGFICRFMGVDCWHPDENRVLNLRLSDLGLMGQFPPGIQKCTSLT GLDLSHNELQGPIPSDISKRLPYITNLDLSFNNFSGEIPINITSLSFLNDLKLDNNNLTGHIPLEIGQLDRIMVFTVTNNRLSGPVPNFRGNYIPADSFA NNTGLCGKPLESCSIHQMKFDYSFKSGFVIGYIVFSTSVAIFFTSCCVPWRKHKITDDDQAGSSPTGGLLEEGVKEISMLEKRVTRMSYADLNDATDNFS ENNVIGQGKMGMLYKASLPNGYVLAVKKLHDSQFLEEQFISELKILGSLRHINVLPLLGFCVESNQRFLVYNYMPNGNLYDWLHPMEEGQEKAMEWGVRV KVAVGLARGLAWLHQNCHTVKIIHLDISSKCILLDQNFQPKLSNFGEAMLMSSTCASSVNSEFWEMAFVKEDVHGFGVVLLEMITGVDPSNMTASSNNVL NEWIGHLSSSSDFHGAIDKSLIGQGFDAEIVQLLKVACTCVDPIPDRRPIMLQVYEDIKQVLKLWVLVDLFFCLNFKIVLIREVNCRF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G48380		BIR1	BAK1-interacting receptor-like...		Potri.017G003800 [exp]	0	1
					Potri.017G003866 [exp]	1.41	0.9974
AT5G48380		BIR1	BAK1-interacting receptor-like...		Potri.017G003251 [exp]	2.82	0.9950
AT1G68040			S-adenosyl-L-methionine-depend...		Potri.019G016102 [exp]	3.74	0.9929
AT1G21550			Calcium-binding EF-hand family...		Potri.002G077300 [exp]	4.47	0.9948
AT4G39830			Cupredoxin superfamily protein...		Potri.005G079400 [exp]	5.47	0.9930	Pt-AO1.3
AT1G74190		AtRLP15	receptor like protein 15 (.1)		Potri.005G009700 [exp]	5.47	0.9917
AT2G46150			Late embryogenesis abundant (L...		Potri.001G098100 [exp]	6.70	0.9923
AT1G21270		WAK2	wall-associated kinase 2 (.1)		Potri.004G192100 [exp]	7.54	0.9872
AT5G04500			glycosyltransferase family pro...		Potri.010G232700 [exp]	8.12	0.9861
AT4G11480		CRK32	cysteine-rich RLK (RECEPTOR-li...		Potri.017G005500 [exp]	8.83	0.9889

Compare expression of checked genes

Potri.017G003800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.