Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26320 238 / 1e-78 Zinc-binding dehydrogenase family protein (.1.2) AT5G16970 238 / 1e-78 AT-AER alkenal reductase (.1) AT3G03080 237 / 3e-78 Zinc-binding dehydrogenase family protein (.1) AT5G16980 232 / 1e-77 Zinc-binding dehydrogenase family protein (.1.2) AT5G16990 234 / 3e-77 Zinc-binding dehydrogenase family protein (.1) AT5G17000 232 / 2e-76 Zinc-binding dehydrogenase family protein (.1) AT5G16960 229 / 2e-75 Zinc-binding dehydrogenase family protein (.1) AT5G37980 229 / 5e-75 Zinc-binding dehydrogenase family protein (.1) AT5G37940 224 / 5e-73 Zinc-binding dehydrogenase family protein (.1) AT5G38000 218 / 1e-70 Zinc-binding dehydrogenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G002950 [exp] 339 / 1e-118 AT5G16970 464 / 7e-165 alkenal reductase (.1) Potri.017G002500 [exp] 275 / 3e-93 AT3G03080 433 / 1e-152 Zinc-binding dehydrogenase family protein (.1) Potri.007G143600 [exp] 260 / 2e-87 AT5G16970 501 / 1e-179 alkenal reductase (.1) Potri.007G143700 [exp] 255 / 2e-85 AT5G16970 495 / 2e-177 alkenal reductase (.1) Potri.007G143800 [exp] 245 / 2e-81 AT1G26320 490 / 4e-175 Zinc-binding dehydrogenase family protein (.1.2) Potri.017G005400 [exp] 245 / 2e-81 AT5G37980 488 / 3e-174 Zinc-binding dehydrogenase family protein (.1) Potri.017G005700 [exp] 243 / 6e-80 AT1G26320 496 / 1e-176 Zinc-binding dehydrogenase family protein (.1.2) Potri.017G006000 [exp] 241 / 1e-79 AT5G37980 493 / 2e-176 Zinc-binding dehydrogenase family protein (.1) Potri.017G002300 [exp] 240 / 1e-79 AT1G26320 488 / 2e-174 Zinc-binding dehydrogenase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036289 [exp] 237 / 3e-78 AT5G16990 463 / 1e-164 Zinc-binding dehydrogenase family protein (.1) Lus10010989 [exp] 237 / 3e-78 AT5G16990 483 / 2e-172 Zinc-binding dehydrogenase family protein (.1) Lus10007832 [exp] 234 / 3e-77 AT5G16990 464 / 3e-165 Zinc-binding dehydrogenase family protein (.1) Lus10010988 [exp] 231 / 4e-76 AT5G16990 486 / 6e-174 Zinc-binding dehydrogenase family protein (.1) Lus10040177 [exp] 231 / 1e-75 AT5G37980 480 / 3e-171 Zinc-binding dehydrogenase family protein (.1) Lus10007853 [exp] 227 / 3e-74 AT5G16990 468 / 3e-166 Zinc-binding dehydrogenase family protein (.1) Lus10004380 [exp] 227 / 3e-74 AT5G37980 477 / 4e-170 Zinc-binding dehydrogenase family protein (.1) Lus10004379 [exp] 226 / 4e-74 AT5G17000 487 / 4e-174 Zinc-binding dehydrogenase family protein (.1) Lus10040589 [exp] 201 / 5e-63 AT1G65560 446 / 3e-156 Zinc-binding dehydrogenase family protein (.1) Lus10030087 [exp] 183 / 2e-57 AT5G16990 336 / 1e-114 Zinc-binding dehydrogenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF00107 [poplar] [flax] ADH_zinc_N Zinc-binding dehydrogenase
Representative CDS sequence Show only first row Show all	>Potri.017G003950.1 pacid=42813827 polypeptide=Potri.017G003950.1.p locus=Potri.017G003950 ID=Potri.017G003950.1.v4.1 annot-version=v4.1 ATGGGCTGCTATGTGGTTGGTAGTGCAGGAAGTCAAGAAAAGGTTGATTTGCTGAAGAACAAGCTGGGATTTGATGCTGCATTCAATTATAAAGAAGAGA AAAACTTGGATGACACATTGAAAAGGCACTTTCCTGAAGGCATTGACATTTGCTTTGACAATGTTGGGGGCAAAATGCTTGATGCTGTACTACTCAACAT GAAACTTAATGGCCGCATTGCTCACTGTGGAATGATTTCACAATACACACTGGATGAGCCTGAAGGCATAAAGAACATGATGAACATCATTTATAAGCGG CTTCGCTTGGAAGGATTTGTTGTCACTGATCACTATCACCTCTTTCCCAAGTTCCTAGACTTCATGTTGCCTTGCATTAGAGAAGGGAAGATTGTGTATG TGGAAGACATATCTGAAGCTCTCGAGAGCTGTCCAGCTGCTCTTGTAGGACTTTTTAATAGCAGCAAACTTGGAAAGAAAGTTGTTATAGTTGCTACAGA ATTAATAACAAGCCAACCAAACTGTAGCGTTCTCTTGGGCCAATATTGA
AA sequence Show only first row Show all	>Potri.017G003950.1 pacid=42813827 polypeptide=Potri.017G003950.1.p locus=Potri.017G003950 ID=Potri.017G003950.1.v4.1 annot-version=v4.1 MGCYVVGSAGSQEKVDLLKNKLGFDAAFNYKEEKNLDDTLKRHFPEGIDICFDNVGGKMLDAVLLNMKLNGRIAHCGMISQYTLDEPEGIKNMMNIIYKR LRLEGFVVTDHYHLFPKFLDFMLPCIREGKIVYVEDISEALESCPAALVGLFNSSKLGKKVVIVATELITSQPNCSVLLGQY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G26320			Zinc-binding dehydrogenase fam...		Potri.017G003950 [exp]	0	1
AT5G16970		AT-AER	alkenal reductase (.1)		Potri.017G004032 [exp]	2.00	0.8329
AT3G61980			serine protease inhibitor, Kaz...		Potri.014G108700 [exp]	7.07	0.7944
AT3G53310	B3	REM20	AP2/B3-like transcriptional fa...		Potri.011G005601 [exp]	7.74	0.7882
AT3G06880			Transducin/WD40 repeat-like su...		Potri.002G021600 [exp]	9.38	0.7871
AT1G69800			Cystathionine beta-synthase (C...		Potri.017G053600 [exp]	10.39	0.8182
AT1G67856			RING/U-box superfamily protein...		Potri.008G185800 [exp]	12.40	0.7802
AT1G14190			Glucose-methanol-choline (GMC)...		Potri.010G168200 [exp]	12.64	0.7925
AT1G73220		1-Oct, ATOCT1	organic cation/carnitine trans...		Potri.012G037400 [exp]	15.49	0.7764
AT4G22290			Ubiquitin-specific protease fa...		Potri.002G176200 [exp]	17.14	0.7944
AT4G30420			nodulin MtN21 /EamA-like trans...		Potri.006G177700 [exp]	18.65	0.7826

Compare expression of checked genes

Potri.017G003950 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.