Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G59850 520 / 0 Pectin lyase-like superfamily protein (.1) AT2G43870 512 / 0 Pectin lyase-like superfamily protein (.1) AT1G05660 418 / 3e-145 Pectin lyase-like superfamily protein (.1) AT2G43890 416 / 1e-144 Pectin lyase-like superfamily protein (.1) AT2G43860 411 / 1e-142 Pectin lyase-like superfamily protein (.1) AT1G65570 407 / 8e-141 Pectin lyase-like superfamily protein (.1) AT1G05650 404 / 1e-139 Pectin lyase-like superfamily protein (.1) AT2G43880 391 / 1e-134 Pectin lyase-like superfamily protein (.1) AT3G57510 272 / 1e-87 ADPG1 Pectin lyase-like superfamily protein (.1) AT2G40310 271 / 1e-87 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G003500 [exp] 742 / 0 AT3G59850 498 / 4e-177 Pectin lyase-like superfamily protein (.1) Potri.017G005300 [exp] 724 / 0 AT3G59850 504 / 3e-179 Pectin lyase-like superfamily protein (.1) Potri.017G005900 [exp] 717 / 0 AT3G59850 486 / 3e-172 Pectin lyase-like superfamily protein (.1) Potri.017G005600 [exp] 713 / 0 AT3G59850 496 / 5e-176 Pectin lyase-like superfamily protein (.1) Potri.007G144400 [exp] 653 / 0 AT3G59850 476 / 2e-168 Pectin lyase-like superfamily protein (.1) Potri.007G144200 [exp] 651 / 0 AT3G59850 482 / 1e-170 Pectin lyase-like superfamily protein (.1) Potri.017G006200 [exp] 638 / 0 AT3G59850 503 / 7e-178 Pectin lyase-like superfamily protein (.1) Potri.017G005800 [exp] 625 / 0 AT3G59850 499 / 2e-177 Pectin lyase-like superfamily protein (.1) Potri.008G010700 [exp] 610 / 0 AT3G59850 454 / 7e-160 Pectin lyase-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011419 [exp] 562 / 0 AT2G43870 507 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10002125 [exp] 562 / 0 AT3G59850 509 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10002123 [exp] 551 / 0 AT2G43870 498 / 5e-177 Pectin lyase-like superfamily protein (.1) Lus10002124 [exp] 498 / 1e-176 AT2G43870 505 / 7e-180 Pectin lyase-like superfamily protein (.1) Lus10011418 [exp] 495 / 1e-175 AT2G43870 499 / 2e-177 Pectin lyase-like superfamily protein (.1) Lus10002126 [exp] 449 / 2e-157 AT2G43870 461 / 1e-162 Pectin lyase-like superfamily protein (.1) Lus10022530 [exp] 442 / 2e-154 AT2G43870 471 / 4e-166 Pectin lyase-like superfamily protein (.1) Lus10010584 [exp] 361 / 1e-122 AT1G05660 424 / 2e-147 Pectin lyase-like superfamily protein (.1) Lus10008343 [exp] 361 / 1e-122 AT1G05650 425 / 1e-147 Pectin lyase-like superfamily protein (.1) Lus10005304 [exp] 357 / 4e-121 AT1G05660 420 / 1e-145 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [poplar] [flax] Pec_lyase-like PF12708 [poplar] [flax] Pectate_lyase_3 Pectate lyase superfamily protein
Representative CDS sequence Show only first row Show all	>Potri.017G004500.1 pacid=42813255 polypeptide=Potri.017G004500.1.p locus=Potri.017G004500 ID=Potri.017G004500.1.v4.1 annot-version=v4.1 ATGGCAGGCCTTCCACTTCCACTGATCGCCCATCCTAATACCCTTTTCGTCATCATTTTCTTTGCGTTCTCACCTTTAGCAAAGGCAGCACAATATAGTG TGTTAAGCTATGGTGCCAAACCTGATGGAAAAACTGACGCAACGAAGGCCTTTGCTGCTGCTTGGGCGCAGGCATGTGCCTCAGCACAACCAGCCACAAT TTCTGTTCCTAAAGGGAGTTTCTCTTTAGGTCAAGTGAGGTTTCAGGGTCCTTGCAAGAACCGTGCTATCTTGGTACGTATAGATGGCACCCTAGTCGCA CCATCAGATTATAAGGTCATTGGCAACGCTAAAAATTGGCTAATGTTTGAGCATGTTAATGGGGTTACTGTATCTGGAGGGACTCTTGATGGCCAGGGTG CTGGACTGTGGTCTTGCAAGAATTCCGGCAAGGGTTGCCCCAGAGGCGCAACGTCACTTGAGTTTTCCAATTCAAACAATATTGCAATCACCGGATTGGC ATCATTAAATAGCCAGTTGTTTCACATTGTCATCCATGGTTGCCAAAACGTCAAAGTGCAAGGAGTCAAAGTCTCTGCCGCCGGAAACAGCCCAAACACG GATGGCATTCACGTTCAATCATCAACCGGTGTCACCATATTGAATTCTAGGATTGGAACAGGTGACGACTGTGTATCGATTGGCCCCGGTACCTCAAGTT TGTGGATTGAAAATGTGGCATGTGGACCTGGCCATGGAATCAGCATTGGAAGTTTAGGCAAAGAATCCCAAGAGGCTGGTGTGCAAAATGTTACAGTCAA GACCTCTACATTTACCGGTACAGAAAATGGACTGAGAATTAAGTCTTGGGGAAGGCCTAGCAATGGTTTTGCTAGAGATATTCTTTTCCAACATGCAGTC ATGAATAACGTCCAAAATCCCATTGTAATAGACCAAAACTATTGCCCCGGCGAGAAGAATTGCCCTGGCCAGGTTTCTGGTGTGAAAATAAGTGACGTGA CCTACCAAGACATTCATGGATCATCAGCAACAGAAGTGGCGGTGAAATTTGATTGTAGCAAAAAATATCCATGCACTGGGATCAAATTAGAAGATGTAAA GCTCACTTACAAGAATCAGCCAGCTGAAGCATCATGCAGCAATGCTGGTGGAGTTGCTTCAGGACTTGTTCAGCCCACTAGCTGTCTATAA
AA sequence Show only first row Show all	>Potri.017G004500.1 pacid=42813255 polypeptide=Potri.017G004500.1.p locus=Potri.017G004500 ID=Potri.017G004500.1.v4.1 annot-version=v4.1 MAGLPLPLIAHPNTLFVIIFFAFSPLAKAAQYSVLSYGAKPDGKTDATKAFAAAWAQACASAQPATISVPKGSFSLGQVRFQGPCKNRAILVRIDGTLVA PSDYKVIGNAKNWLMFEHVNGVTVSGGTLDGQGAGLWSCKNSGKGCPRGATSLEFSNSNNIAITGLASLNSQLFHIVIHGCQNVKVQGVKVSAAGNSPNT DGIHVQSSTGVTILNSRIGTGDDCVSIGPGTSSLWIENVACGPGHGISIGSLGKESQEAGVQNVTVKTSTFTGTENGLRIKSWGRPSNGFARDILFQHAV MNNVQNPIVIDQNYCPGEKNCPGQVSGVKISDVTYQDIHGSSATEVAVKFDCSKKYPCTGIKLEDVKLTYKNQPAEASCSNAGGVASGLVQPTSCL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G59850			Pectin lyase-like superfamily ...		Potri.017G004500 [exp]	0	1
AT1G13260	AP2_ERF	EDF4, RAV1	ETHYLENE RESPONSE DNA BINDING ...		Potri.004G219700 [exp]	6.63	0.8753
AT3G53310	B3	REM20	AP2/B3-like transcriptional fa...		Potri.004G219800 [exp]	15.42	0.8449
AT1G64870			unknown protein		Potri.010G216400 [exp]	32.74	0.7733
AT1G29740			Leucine-rich repeat transmembr...		Potri.011G073541 [exp]	52.64	0.7767
AT1G13080		CYP71B2	"cytochrome P450, family 71, s...		Potri.015G086000 [exp]	123.64	0.7719

Compare expression of checked genes

Potri.017G004500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.