Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16970 409 / 1e-143 AT-AER alkenal reductase (.1) AT5G37980 408 / 3e-143 Zinc-binding dehydrogenase family protein (.1) AT5G16990 404 / 6e-142 Zinc-binding dehydrogenase family protein (.1) AT1G26320 404 / 8e-142 Zinc-binding dehydrogenase family protein (.1.2) AT5G17000 400 / 2e-140 Zinc-binding dehydrogenase family protein (.1) AT5G37940 399 / 6e-140 Zinc-binding dehydrogenase family protein (.1) AT3G03080 398 / 2e-139 Zinc-binding dehydrogenase family protein (.1) AT5G16960 392 / 7e-137 Zinc-binding dehydrogenase family protein (.1) AT5G38000 392 / 8e-137 Zinc-binding dehydrogenase family protein (.1) AT3G59845 358 / 1e-123 Zinc-binding dehydrogenase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G005400 [exp] 629 / 0 AT5G37980 488 / 3e-174 Zinc-binding dehydrogenase family protein (.1) Potri.017G006000 [exp] 608 / 0 AT5G37980 493 / 2e-176 Zinc-binding dehydrogenase family protein (.1) Potri.017G005700 [exp] 598 / 0 AT1G26320 496 / 1e-176 Zinc-binding dehydrogenase family protein (.1.2) Potri.017G004600 [exp] 469 / 2e-168 AT5G37980 419 / 7e-148 Zinc-binding dehydrogenase family protein (.1) Potri.007G143800 [exp] 462 / 1e-164 AT1G26320 490 / 4e-175 Zinc-binding dehydrogenase family protein (.1.2) Potri.007G143700 [exp] 456 / 2e-162 AT5G16970 495 / 2e-177 alkenal reductase (.1) Potri.007G143600 [exp] 409 / 1e-143 AT5G16970 501 / 1e-179 alkenal reductase (.1) Potri.017G002300 [exp] 404 / 6e-142 AT1G26320 488 / 2e-174 Zinc-binding dehydrogenase family protein (.1.2) Potri.007G142400 [exp] 404 / 1e-141 AT5G16990 491 / 1e-175 Zinc-binding dehydrogenase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004380 [exp] 409 / 2e-143 AT5G37980 477 / 4e-170 Zinc-binding dehydrogenase family protein (.1) Lus10040177 [exp] 405 / 3e-142 AT5G37980 480 / 3e-171 Zinc-binding dehydrogenase family protein (.1) Lus10004379 [exp] 398 / 2e-139 AT5G17000 487 / 4e-174 Zinc-binding dehydrogenase family protein (.1) Lus10010988 [exp] 398 / 3e-139 AT5G16990 486 / 6e-174 Zinc-binding dehydrogenase family protein (.1) Lus10010989 [exp] 395 / 2e-138 AT5G16990 483 / 2e-172 Zinc-binding dehydrogenase family protein (.1) Lus10007853 [exp] 379 / 6e-132 AT5G16990 468 / 3e-166 Zinc-binding dehydrogenase family protein (.1) Lus10007832 [exp] 377 / 3e-131 AT5G16990 464 / 3e-165 Zinc-binding dehydrogenase family protein (.1) Lus10036289 [exp] 375 / 2e-130 AT5G16990 463 / 1e-164 Zinc-binding dehydrogenase family protein (.1) Lus10003638 [exp] 336 / 4e-116 AT3G03080 356 / 8e-124 Zinc-binding dehydrogenase family protein (.1) Lus10040589 [exp] 318 / 3e-106 AT1G65560 446 / 3e-156 Zinc-binding dehydrogenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF00107 [poplar] [flax] ADH_zinc_N Zinc-binding dehydrogenase CL0296 [poplar] [flax] GroES PF16884 [poplar] [flax] ADH_N_2 N-terminal domain of oxidoreductase
Representative CDS sequence Show only first row Show all	>Potri.017G004800.2 pacid=42812822 polypeptide=Potri.017G004800.2.p locus=Potri.017G004800 ID=Potri.017G004800.2.v4.1 annot-version=v4.1 ATGGCTAGTGATCATAGTGTCCGTGGTGAGGAAGTGATCAGCAACAAACAAGTGATCCTCAAGGACTATGTGAGTGGTTTTCCAAGAGAATCAAACCTGT ACCTGACGACAAGTAACATCAAACTCAAAGTGCCAGAAGAAGAGAGTGGTAAAGATGCTGTGCTGGTTAAGAATCTCTACTTGTCTTGTGATCCTTTCAT GCGTGGACGCATGCAGAGAGATCTGCCACCCGGTGAACCTGAACAATCTTCCTACTCCCTTGGCTCTCCAATTGTTGGATATGGAGTGGCTAGAGTTGTT GATTCCAGGCACTCTGACTTCAAGAAAGGCGATTTGGTCTGGGGAAGGACAATCAGCTGGGAAGAATACAGTCTAATAACAACACCTGAATACCTCTTCA AAATCAACCATACTGATGATATACCCCTTTCATACTACACTGGAATTCTTGGAATGCCTGGCATCGCTGCTTATTTTTGCTTCTTTGACATTGGTTCTCC CAAGGAAGGAGACCGTGTCTTCGTTTCATCAGCATCAGGCGCAGTTGGTCAGCTTGTTGGGCAATTTGCAAAGCTGATAGGTTGTTATGTTGTTGGAAGT GCTGGAAGTAAAGAAAAGGTTGAACTATTGAAGACCAAGTTTGGATTTGATGATGCTTTCAATTATAAAGAGGAGCATGACTTGGATGCAGCCTTGAAAA GGTACTTCCCTGAAGGCATCGACATTTACTTTGAGAATGTTGGAGGAAAAATGCTTGATGCTGTCCTTCTAAACATGAGATACCATGGCCGTATTGCTTT GTGTGGAATGATCTCTCAATACAATCTCGAGCAGCCTGAAAGTGTGGAGAACTTAATCGCTGTACTCTTTAAGCATATCCGGATGGAAGGGTTTTCGGTT GCCGAGTACTATGACCAATACTCCCAAGTTCTTGGATTTTGTTCTGCCTTATATTAA
AA sequence Show only first row Show all	>Potri.017G004800.2 pacid=42812822 polypeptide=Potri.017G004800.2.p locus=Potri.017G004800 ID=Potri.017G004800.2.v4.1 annot-version=v4.1 MASDHSVRGEEVISNKQVILKDYVSGFPRESNLYLTTSNIKLKVPEEESGKDAVLVKNLYLSCDPFMRGRMQRDLPPGEPEQSSYSLGSPIVGYGVARVV DSRHSDFKKGDLVWGRTISWEEYSLITTPEYLFKINHTDDIPLSYYTGILGMPGIAAYFCFFDIGSPKEGDRVFVSSASGAVGQLVGQFAKLIGCYVVGS AGSKEKVELLKTKFGFDDAFNYKEEHDLDAALKRYFPEGIDIYFENVGGKMLDAVLLNMRYHGRIALCGMISQYNLEQPESVENLIAVLFKHIRMEGFSV AEYYDQYSQVLGFCSALY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G16970		AT-AER	alkenal reductase (.1)		Potri.017G004800 [exp]	0	1
AT1G47890		AtRLP7	receptor like protein 7 (.1)		Potri.016G127000 [exp]	3.00	0.9671
AT2G17040	NAC	ANAC036	NAC domain containing protein ...		Potri.004G181900 [exp]	3.46	0.9690
AT1G02260			Divalent ion symporter (.1)		Potri.017G141950 [exp]	6.32	0.9603
AT5G17680			disease resistance protein (TI...		Potri.019G068300 [exp]	6.55	0.9286
AT1G45616		AtRLP6	receptor like protein 6 (.1)		Potri.016G126900 [exp]	7.21	0.9670
AT4G23880			unknown protein		Potri.003G140200 [exp]	9.00	0.9548
AT1G45616		AtRLP6	receptor like protein 6 (.1)		Potri.011G055000 [exp]	10.00	0.9638
AT4G23880			unknown protein		Potri.003G140233 [exp]	11.40	0.9523
AT2G47890	CO	COL13	B-box type zinc finger protein...		Potri.014G134601 [exp]	11.83	0.9517
AT4G23880			unknown protein		Potri.003G140266 [exp]	12.24	0.9506

Compare expression of checked genes

Potri.017G004800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.