Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48380 231 / 2e-71 BIR1 BAK1-interacting receptor-like kinase 1 (.1) AT1G27190 184 / 7e-54 Leucine-rich repeat protein kinase family protein (.1) AT1G69990 178 / 8e-52 Leucine-rich repeat protein kinase family protein (.1) AT3G28450 176 / 9e-51 Leucine-rich repeat protein kinase family protein (.1) AT5G07280 149 / 2e-40 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) AT2G02220 149 / 3e-40 ATPSKR1 phytosulfokin receptor 1 (.1) AT5G45780 145 / 1e-39 Leucine-rich repeat protein kinase family protein (.1) AT1G73080 143 / 2e-38 ATPEPR1, PEPR1 PEP1 receptor 1 (.1) AT4G33430 142 / 2e-38 SERK3, RKS10, ELG, BAK1, ATSERK3, ATBAK1 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2) AT2G13800 142 / 3e-38 BAK8, ATSERK5 BRI1- ASSOCIATED KINASE 8, SOMATIC EMBRYOGENESIS RECEPTOR LIKE KINASE 5, somatic embryogenesis receptor-like kinase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G003101 [exp] 515 / 0 AT5G48380 239 / 4e-71 BAK1-interacting receptor-like kinase 1 (.1) Potri.017G004216 [exp] 386 / 3e-131 AT5G48380 412 / 2e-136 BAK1-interacting receptor-like kinase 1 (.1) Potri.017G003251 [exp] 377 / 8e-131 AT5G48380 280 / 1e-88 BAK1-interacting receptor-like kinase 1 (.1) Potri.017G003601 [exp] 349 / 2e-121 AT5G48380 255 / 3e-80 BAK1-interacting receptor-like kinase 1 (.1) Potri.017G003800 [exp] 358 / 4e-121 AT5G48380 455 / 1e-153 BAK1-interacting receptor-like kinase 1 (.1) Potri.017G004900 [exp] 328 / 1e-111 AT5G48380 262 / 2e-81 BAK1-interacting receptor-like kinase 1 (.1) Potri.017G007600 [exp] 243 / 2e-78 AT5G48380 208 / 5e-61 BAK1-interacting receptor-like kinase 1 (.1) Potri.010G178050 [exp] 240 / 5e-75 AT5G48380 710 / 0.0 BAK1-interacting receptor-like kinase 1 (.1) Potri.002G240000 [exp] 239 / 2e-74 AT5G48380 721 / 0.0 BAK1-interacting receptor-like kinase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002147 [exp] 227 / 8e-70 AT5G48380 755 / 0.0 BAK1-interacting receptor-like kinase 1 (.1) Lus10008743 [exp] 224 / 5e-69 AT5G48380 764 / 0.0 BAK1-interacting receptor-like kinase 1 (.1) Lus10034279 [exp] 207 / 5e-66 AT5G48380 213 / 1e-64 BAK1-interacting receptor-like kinase 1 (.1) Lus10030811 [exp] 177 / 6e-51 AT1G27190 772 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10013288 [exp] 160 / 7e-48 AT1G27190 390 / 2e-133 Leucine-rich repeat protein kinase family protein (.1) Lus10036672 [exp] 150 / 4e-41 AT5G62710 936 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10041486 [exp] 145 / 6e-41 AT1G69990 134 / 2e-34 Leucine-rich repeat protein kinase family protein (.1) Lus10033104 [exp] 149 / 1e-40 AT5G62710 934 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10029802 [exp] 148 / 5e-40 AT2G19130 729 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10020962 [exp] 144 / 5e-39 AT4G33430 989 / 0.0 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.017G005001.1 pacid=42812933 polypeptide=Potri.017G005001.1.p locus=Potri.017G005001 ID=Potri.017G005001.1.v4.1 annot-version=v4.1 ATGCTGTACAAAGCAGCGTTGCCTAGTGTTTATCTCTTTGCAGTGAAGAAATTACACAACTGTCGAATCCTCGAGGAGCAATTCGTGTTAGAATTGAAGA CACTTGGTTCATTGAGGCATGTCAACATACTTCAACTTTCGGGATTTTCAATCACATCAAAACATTGGCTTCTGGTTTTCAAATACATGCCAAATGGTAA CCTTTATGATTGGCTACATCCAATGGAAGGTCAGGCAAAGATTATGGAATGGACTGTGAGGTTTAAAGTTGCAATCGGGTTAGCAAGAGGCTTGGCATGG CTTCATCAGGACTGCAGTAGTACTATCCGAGTTTTCCATCTTAACATAAGCTCAAAGTGCATCTTACTTGATCAGGATTTCGAGCCAAAGTTGTCGAATT TTGGGGAGGCGATAATCGCAAATCCAACAAACACTTCCCCTTTGAATGGTGAGTTTTGGGATACAGCATTTGCTATGGAAGATGTGTATGGATTTGGAGT TGTGCTCCTTGAGCTGATTACGGGGGTGGATTCTAGCAGAATGACTGGTTCCTCGAACAGTCTTCTTAATGAATGGATTAGTCATCTTTTGACTAGTTCT AAGATCTATGATGCCATTGATAAGTCTCTGGTTGGGCAAGGATTTGATGATGAGATATTTCAGCTGCTTAAAGTTGCATGCCACTGTGTTGATTCCATTC CAGATCGAAGACCAACAATGCATCAATTGTACAAAGACATAAGAGCAATGACGGAGAGATGTCGCCAAATTGATGATTCAGAGATTCTAGTGCAGCAGCA TGAAATTTACCCTCCCAGCTCAAAGGGCAAATCTGTTGAGATTGAAATGGCATAG
AA sequence Show only first row Show all	>Potri.017G005001.1 pacid=42812933 polypeptide=Potri.017G005001.1.p locus=Potri.017G005001 ID=Potri.017G005001.1.v4.1 annot-version=v4.1 MLYKAALPSVYLFAVKKLHNCRILEEQFVLELKTLGSLRHVNILQLSGFSITSKHWLLVFKYMPNGNLYDWLHPMEGQAKIMEWTVRFKVAIGLARGLAW LHQDCSSTIRVFHLNISSKCILLDQDFEPKLSNFGEAIIANPTNTSPLNGEFWDTAFAMEDVYGFGVVLLELITGVDSSRMTGSSNSLLNEWISHLLTSS KIYDAIDKSLVGQGFDDEIFQLLKVACHCVDSIPDRRPTMHQLYKDIRAMTERCRQIDDSEILVQQHEIYPPSSKGKSVEIEMA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G48380		BIR1	BAK1-interacting receptor-like...		Potri.017G005001 [exp]	0	1
AT3G51970		ATASAT1, ASAT1,...	ARABIDOPSIS THALIANA STEROL O-...		Potri.009G055100 [exp]	72.09	0.7652
AT1G45616		AtRLP6	receptor like protein 6 (.1)		Potri.012G005600 [exp]	214.83	0.7585
					Potri.003G152900 [exp]	275.46	0.7532

Compare expression of checked genes

Potri.017G005001 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.