Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48380 213 / 4e-63 BIR1 BAK1-interacting receptor-like kinase 1 (.1) AT1G27190 168 / 3e-46 Leucine-rich repeat protein kinase family protein (.1) AT1G69990 166 / 1e-45 Leucine-rich repeat protein kinase family protein (.1) AT3G13380 164 / 7e-44 BRL3 BRI1-like 3 (.1) AT4G22130 159 / 3e-43 SRF8 STRUBBELIG-receptor family 8 (.1.2) AT5G56890 160 / 8e-43 Protein kinase superfamily protein (.1) AT1G09440 155 / 1e-42 Protein kinase superfamily protein (.1) AT3G28450 155 / 8e-42 Leucine-rich repeat protein kinase family protein (.1) AT5G24080 152 / 2e-41 Protein kinase superfamily protein (.1) AT5G18500 151 / 8e-41 Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G004400 [exp] 738 / 0 AT5G48380 221 / 1e-65 BAK1-interacting receptor-like kinase 1 (.1) Potri.017G003400 [exp] 733 / 0 AT5G48380 209 / 1e-61 BAK1-interacting receptor-like kinase 1 (.1) Potri.017G007600 [exp] 449 / 8e-157 AT5G48380 208 / 5e-61 BAK1-interacting receptor-like kinase 1 (.1) Potri.017G004900 [exp] 377 / 6e-129 AT5G48380 262 / 2e-81 BAK1-interacting receptor-like kinase 1 (.1) Potri.017G003800 [exp] 332 / 7e-109 AT5G48380 455 / 1e-153 BAK1-interacting receptor-like kinase 1 (.1) Potri.017G004216 [exp] 329 / 4e-107 AT5G48380 412 / 2e-136 BAK1-interacting receptor-like kinase 1 (.1) Potri.017G003601 [exp] 287 / 6e-95 AT5G48380 255 / 3e-80 BAK1-interacting receptor-like kinase 1 (.1) Potri.017G003251 [exp] 290 / 1e-94 AT5G48380 280 / 1e-88 BAK1-interacting receptor-like kinase 1 (.1) Potri.017G003101 [exp] 241 / 3e-74 AT5G48380 239 / 4e-71 BAK1-interacting receptor-like kinase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008743 [exp] 217 / 2e-64 AT5G48380 764 / 0.0 BAK1-interacting receptor-like kinase 1 (.1) Lus10002147 [exp] 214 / 4e-63 AT5G48380 755 / 0.0 BAK1-interacting receptor-like kinase 1 (.1) Lus10034279 [exp] 201 / 1e-61 AT5G48380 213 / 1e-64 BAK1-interacting receptor-like kinase 1 (.1) Lus10030811 [exp] 161 / 8e-44 AT1G27190 772 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011917 [exp] 160 / 5e-43 AT2G20300 951 / 0.0 Abnormal Leaf Shape 2, Protein kinase superfamily protein (.1) Lus10022848 [exp] 157 / 7e-42 AT2G20300 912 / 0.0 Abnormal Leaf Shape 2, Protein kinase superfamily protein (.1) Lus10027635 [exp] 156 / 3e-41 AT5G56890 887 / 0.0 Protein kinase superfamily protein (.1) Lus10033533 [exp] 155 / 5e-41 AT4G39400 1492 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10019061 [exp] 154 / 1e-40 AT4G21380 338 / 5e-104 receptor kinase 3 (.1) Lus10020835 [exp] 154 / 1e-40 AT4G39400 1486 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.017G005150.1 pacid=42813300 polypeptide=Potri.017G005150.1.p locus=Potri.017G005150 ID=Potri.017G005150.1.v4.1 annot-version=v4.1 ATGGCTGTGGGTGGTGCAAAACTTGCTCTTCTTTTGATTCATATCCTCAGTGTTGCCGGCAAAACTTGCTCGTTCGACTACGGGAGTGATGATCATGAAC ATCGGAAAAAGTTGGATTCTTCACTCAAAAGTGGGTTTTTGATAGGTTATGTCTTCTCTTCAGTTTCCATTATAACTATTTTCATGTCCTGTTGTGTGCC TTGGGCTCGTCTCCTCAAGAGGAAAGGGAAAGAGGTGATGATGAAGACACCAATGATGACATCTTTGATGGAAAGGCAAGAGAAGAAGAGAAAAGAAGCC AACGTGCAGAATTCGGAGTTGGAGAAGATGGTCACAAGAACAAGTTTCGCGGCACTCAATATTGCAACTCGCAGTTTTGACCAAGACAATGTCATCGGAG TCGGAAAGATGGGGACAATGTACAGGGCAGCACACCGTTATGATTTGTTTACTGCAGTTAAGAGGTTACATGACTCTCAACATTTAGGGAAACAGTTCAG GTCTGAGCTAATCATTCTAGCCAAGTTCAGACACATGAACATAATTCCACTACTGGGATTCTGCATAGAATCCGGGGAAAGGCTTTTGGTGTACAAATAT ATGCCAAATGGGAACCTTCATGATTGGTTACATCCTGTGAAATGCAACGCTGAAAAACTGGATTGGCATGTCAGGGTTAAAATCGCCATCGGAGTAGCCC GAGGCTTGGCATGGCTTCATGATTTTAACAACTTCCTGATAGTTCATCTTGACATATGCTCAAGAAGCATCTTGCTGGATAAATATTTTGTACCAAAGAT ATCAAATTTTGGAGGGGCAATGCACAGGAGATCAAATGACAAGGGCTTAATTGCAAGTAGTAAGATAGGTGAACTGGAATTGATCAAGCAGGATGTCTAT CAATTTGGTATTCTTCTTCTTGAGCTAATTGCAGTTCATGATCCTGACCATAACAGTAAATCATCTCACACTCTAGAGGAGAATTTGTTTGAACGAATCG CTCATCTATCGAGCAGTTCTTCTGGCCTCTATCATGCTGTTGATAAATCTCTTCTTGGTCAAGGATTTGATGGTGAAATACTTCATTTTCTGAAGATCGC ATCTAGCTGTATTCATCCCATTCTAGATCAAAGGCCAACGATGCTTCAAGCATTCCAAATGTTAATGGTTCTCAGGGGAGAGAGAGAGAGAGAGAGAGAG AGAGAGAGAGAGAGAGAGATTCATCGAAAATCCTAA
AA sequence Show only first row Show all	>Potri.017G005150.1 pacid=42813300 polypeptide=Potri.017G005150.1.p locus=Potri.017G005150 ID=Potri.017G005150.1.v4.1 annot-version=v4.1 MAVGGAKLALLLIHILSVAGKTCSFDYGSDDHEHRKKLDSSLKSGFLIGYVFSSVSIITIFMSCCVPWARLLKRKGKEVMMKTPMMTSLMERQEKKRKEA NVQNSELEKMVTRTSFAALNIATRSFDQDNVIGVGKMGTMYRAAHRYDLFTAVKRLHDSQHLGKQFRSELIILAKFRHMNIIPLLGFCIESGERLLVYKY MPNGNLHDWLHPVKCNAEKLDWHVRVKIAIGVARGLAWLHDFNNFLIVHLDICSRSILLDKYFVPKISNFGGAMHRRSNDKGLIASSKIGELELIKQDVY QFGILLLELIAVHDPDHNSKSSHTLEENLFERIAHLSSSSSGLYHAVDKSLLGQGFDGEILHFLKIASSCIHPILDQRPTMLQAFQMLMVLRGERERERE REREREIHRKS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G48380		BIR1	BAK1-interacting receptor-like...		Potri.017G005150 [exp]	0	1
AT5G60900		RLK1	receptor-like protein kinase 1...		Potri.001G014100 [exp]	1.41	0.9993
AT1G16260			Wall-associated kinase family ...		Potri.003G185622 [exp]	2.00	0.9988
AT1G59970			Matrixin family protein (.1)		Potri.008G027500 [exp]	4.47	0.9986
AT5G37980			Zinc-binding dehydrogenase fam...		Potri.017G005400 [exp]	4.47	0.9977
AT1G16260			Wall-associated kinase family ...		Potri.003G185800 [exp]	6.70	0.9978
AT4G19390			Uncharacterised protein family...		Potri.014G039000 [exp]	6.70	0.9973
AT2G29120		ATGLR2.7	GLUTAMATE RECEPTOR 2.7, gluta...		Potri.001G374800 [exp]	8.48	0.9981
AT2G29120		ATGLR2.7	GLUTAMATE RECEPTOR 2.7, gluta...		Potri.001G374600 [exp]	8.77	0.9980
AT1G59970			Matrixin family protein (.1)		Potri.008G027975 [exp]	9.53	0.9975
AT1G16260			Wall-associated kinase family ...		Potri.003G185750 [exp]	10.39	0.9976

Compare expression of checked genes

Potri.017G005150 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.