Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G59850 486 / 3e-172 Pectin lyase-like superfamily protein (.1) AT2G43870 476 / 2e-168 Pectin lyase-like superfamily protein (.1) AT2G43890 400 / 3e-138 Pectin lyase-like superfamily protein (.1) AT1G05660 392 / 3e-135 Pectin lyase-like superfamily protein (.1) AT2G43860 385 / 4e-132 Pectin lyase-like superfamily protein (.1) AT1G65570 380 / 2e-130 Pectin lyase-like superfamily protein (.1) AT1G05650 380 / 3e-130 Pectin lyase-like superfamily protein (.1) AT2G43880 363 / 7e-124 Pectin lyase-like superfamily protein (.1) AT3G57510 258 / 3e-82 ADPG1 Pectin lyase-like superfamily protein (.1) AT3G14040 253 / 5e-80 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G005300 [exp] 709 / 0 AT3G59850 504 / 3e-179 Pectin lyase-like superfamily protein (.1) Potri.017G003500 [exp] 706 / 0 AT3G59850 498 / 4e-177 Pectin lyase-like superfamily protein (.1) Potri.017G005600 [exp] 699 / 0 AT3G59850 496 / 5e-176 Pectin lyase-like superfamily protein (.1) Potri.017G004500 [exp] 696 / 0 AT3G59850 520 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.007G144200 [exp] 637 / 0 AT3G59850 482 / 1e-170 Pectin lyase-like superfamily protein (.1) Potri.007G144400 [exp] 635 / 0 AT3G59850 476 / 2e-168 Pectin lyase-like superfamily protein (.1) Potri.017G006200 [exp] 622 / 0 AT3G59850 503 / 7e-178 Pectin lyase-like superfamily protein (.1) Potri.017G005800 [exp] 605 / 0 AT3G59850 499 / 2e-177 Pectin lyase-like superfamily protein (.1) Potri.008G010700 [exp] 596 / 0 AT3G59850 454 / 7e-160 Pectin lyase-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002125 [exp] 526 / 0 AT3G59850 509 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10011419 [exp] 521 / 0 AT2G43870 507 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10002123 [exp] 513 / 0 AT2G43870 498 / 5e-177 Pectin lyase-like superfamily protein (.1) Lus10002124 [exp] 465 / 9e-164 AT2G43870 505 / 7e-180 Pectin lyase-like superfamily protein (.1) Lus10011418 [exp] 462 / 2e-162 AT2G43870 499 / 2e-177 Pectin lyase-like superfamily protein (.1) Lus10002126 [exp] 419 / 1e-145 AT2G43870 461 / 1e-162 Pectin lyase-like superfamily protein (.1) Lus10022530 [exp] 416 / 4e-144 AT2G43870 471 / 4e-166 Pectin lyase-like superfamily protein (.1) Lus10008343 [exp] 348 / 3e-117 AT1G05650 425 / 1e-147 Pectin lyase-like superfamily protein (.1) Lus10010584 [exp] 345 / 2e-116 AT1G05660 424 / 2e-147 Pectin lyase-like superfamily protein (.1) Lus10005304 [exp] 342 / 6e-115 AT1G05660 420 / 1e-145 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [poplar] [flax] Pec_lyase-like PF12708 [poplar] [flax] Pectate_lyase_3 Pectate lyase superfamily protein
Representative CDS sequence Show only first row Show all	>Potri.017G005900.1 pacid=42812867 polypeptide=Potri.017G005900.1.p locus=Potri.017G005900 ID=Potri.017G005900.1.v4.1 annot-version=v4.1 ATGGCAGGCCTTCCACCTCCAATGATCCCCCATCCTATTACCCTTTTCTTCATCATTTACTTTGCGTTCTCACCTTTAGCAAAGGCAGCACAATATAGTG TGTTAAGCTATGGTGCCAAACCTGATGGAAAAACTGACTCAACCAAGGCCTTTGCTGCTGCTTGGGCACAGGCATGTGCCTCAGCACAACCAGCCACAAT TTCTGTTCCTAAAGGGAGTTTCTCTTTAGGTCAAGTGAGGTTTCAGGGTCCCTGCAAGAACCGTGCTATCTTGGTACGTATAGATGGCACCCTGGTCGCA CCATCAGATTATAAGGTCATTGGTAACGCTAAAAATTGGCTAATCTTTGAGCATATTAATGGGGTTACTGTATCTGGAGGGACTCTTGATGGCCAGGGTG CTGGACTGTGGTCTTGCAAGAATTCCGGCAAGGGTTGCCCCAGAGGCGCAACGTCACTTGAATTTTCCAATTCAAACAATATTGCAATCACCGGATTGGC ATCATTAAATAGCCAGTTGTTTCACATTGTCATCAATGGTTGCCAAAAGGTCAAAGTGCAAGGAGTCAAAGTCTCTGCCGCCGGAAGCAGCCCTAACACG GATGGTATTCACGTTCAATCATCAACCGGTGTCACCATATTGAATTCTAGGATTGGAACAGGTGACGACTGTGTATCGATTGGCCCCGGTACCTCAAGTT TGTGGATTGAAAATGTGGCTTGTGGACCTGGCCATGGAATCAGCATTGGAAGTTTAGGCAAAGAATCCCAAGAGGCTGGTGTGCAAAATGTTACAGTCAA GACCACTACATTTACCGGTACAGAAAATGGACTGAGAATAAAGTCTTGGGGAAGGCCTAGCAATGGTTTTGCTAGAGATATTCTTTTCCAACATGCAGTC ATGAATAACGTCCAAAATCCTATTGTAATAGACCAAAACTATTGCCCCGGCGAGAAGAATTGCCCTGGCCAGGTTTCTGGTGTGAAAATAAGTGATGTGA CCTACCAAGACATTCATGGATCATCAGCAACAGAAGTGGCGGTGAAATTTGATTGTAGCAAAAAATATCCATGCACTGGGATCAAATTAGAAGATGTAAA GCTCACTTACAAGAATCAGCCAGCTGAAGCATCATGCAGCAATGCTGGTGGAGTTGCTTCAGGACTTGTTCAGCCCACTAGCTGTGTATAA
AA sequence Show only first row Show all	>Potri.017G005900.1 pacid=42812867 polypeptide=Potri.017G005900.1.p locus=Potri.017G005900 ID=Potri.017G005900.1.v4.1 annot-version=v4.1 MAGLPPPMIPHPITLFFIIYFAFSPLAKAAQYSVLSYGAKPDGKTDSTKAFAAAWAQACASAQPATISVPKGSFSLGQVRFQGPCKNRAILVRIDGTLVA PSDYKVIGNAKNWLIFEHINGVTVSGGTLDGQGAGLWSCKNSGKGCPRGATSLEFSNSNNIAITGLASLNSQLFHIVINGCQKVKVQGVKVSAAGSSPNT DGIHVQSSTGVTILNSRIGTGDDCVSIGPGTSSLWIENVACGPGHGISIGSLGKESQEAGVQNVTVKTTTFTGTENGLRIKSWGRPSNGFARDILFQHAV MNNVQNPIVIDQNYCPGEKNCPGQVSGVKISDVTYQDIHGSSATEVAVKFDCSKKYPCTGIKLEDVKLTYKNQPAEASCSNAGGVASGLVQPTSCV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G59850			Pectin lyase-like superfamily ...		Potri.017G005900 [exp]	0	1
AT1G74830			Protein of unknown function, D...		Potri.015G068400 [exp]	1.00	0.8545
					Potri.014G110850 [exp]	1.41	0.8362
AT5G19820		EMB2734	embryo defective 2734, ARM rep...		Potri.004G122133 [exp]	2.44	0.8214
					Potri.004G021400 [exp]	3.46	0.7936
AT1G43760			DNAse I-like superfamily prote...		Potri.004G128961 [exp]	7.07	0.6660
AT4G32690		ATGLB3, GLB3	ARABIDOPSIS HEMOGLOBIN 3, hemo...		Potri.018G036200 [exp]	8.00	0.7532
					Potri.003G185666 [exp]	8.94	0.7076
AT3G59850			Pectin lyase-like superfamily ...		Potri.017G004701 [exp]	9.16	0.7039
AT1G43760			DNAse I-like superfamily prote...		Potri.004G128860 [exp]	12.72	0.6584
AT1G43760			DNAse I-like superfamily prote...		Potri.017G066550 [exp]	14.89	0.5419

Compare expression of checked genes

Potri.017G005900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.