Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G43890 471 / 2e-166 Pectin lyase-like superfamily protein (.1) AT1G05660 471 / 2e-166 Pectin lyase-like superfamily protein (.1) AT1G05650 469 / 2e-165 Pectin lyase-like superfamily protein (.1) AT2G43880 461 / 3e-162 Pectin lyase-like superfamily protein (.1) AT2G43870 415 / 3e-144 Pectin lyase-like superfamily protein (.1) AT3G59850 413 / 1e-143 Pectin lyase-like superfamily protein (.1) AT2G43860 386 / 1e-132 Pectin lyase-like superfamily protein (.1) AT1G65570 364 / 4e-124 Pectin lyase-like superfamily protein (.1) AT1G02790 290 / 7e-95 PGA4 polygalacturonase 4 (.1) AT1G17150 287 / 6e-94 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G006700 [exp] 489 / 2e-173 AT2G43890 591 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.007G145300 [exp] 472 / 1e-166 AT2G43890 566 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.017G006500 [exp] 468 / 5e-165 AT2G43890 552 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.007G144400 [exp] 441 / 1e-154 AT3G59850 476 / 2e-168 Pectin lyase-like superfamily protein (.1) Potri.008G010700 [exp] 431 / 2e-150 AT3G59850 454 / 7e-160 Pectin lyase-like superfamily protein (.1) Potri.017G006200 [exp] 431 / 2e-149 AT3G59850 503 / 7e-178 Pectin lyase-like superfamily protein (.1) Potri.007G144200 [exp] 427 / 4e-149 AT3G59850 482 / 1e-170 Pectin lyase-like superfamily protein (.1) Potri.007G144100 [exp] 427 / 7e-149 AT2G43870 525 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.010G248200 [exp] 426 / 1e-148 AT2G43870 534 / 0.0 Pectin lyase-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008343 [exp] 475 / 2e-167 AT1G05650 425 / 1e-147 Pectin lyase-like superfamily protein (.1) Lus10010584 [exp] 459 / 2e-161 AT1G05660 424 / 2e-147 Pectin lyase-like superfamily protein (.1) Lus10005304 [exp] 456 / 1e-159 AT1G05660 420 / 1e-145 Pectin lyase-like superfamily protein (.1) Lus10002125 [exp] 447 / 6e-157 AT3G59850 509 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10011419 [exp] 445 / 4e-156 AT2G43870 507 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10002123 [exp] 436 / 2e-152 AT2G43870 498 / 5e-177 Pectin lyase-like superfamily protein (.1) Lus10002124 [exp] 412 / 4e-143 AT2G43870 505 / 7e-180 Pectin lyase-like superfamily protein (.1) Lus10011418 [exp] 412 / 8e-143 AT2G43870 499 / 2e-177 Pectin lyase-like superfamily protein (.1) Lus10022530 [exp] 410 / 5e-142 AT2G43870 471 / 4e-166 Pectin lyase-like superfamily protein (.1) Lus10002126 [exp] 397 / 3e-137 AT2G43870 461 / 1e-162 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [poplar] [flax] Pec_lyase-like PF12708 [poplar] [flax] Pectate_lyase_3 Pectate lyase superfamily protein
Representative CDS sequence Show only first row Show all	>Potri.017G006400.1 pacid=42814417 polypeptide=Potri.017G006400.1.p locus=Potri.017G006400 ID=Potri.017G006400.1.v4.1 annot-version=v4.1 ATGGTGAAGATAATACTAGTATATTGTGTTCTTTTCCTCTTATTTGCAGCCTCCTACCAAGCATCAAATGTGGTCTACAATGTCGTCAAACTTGGAGCGA AGCCAGACGGCAAGATCGATTCTACCGAAGCATTTAAGAAGGCATGGACGTTAGCATGCAGCTCAACATGGCCAGCCATGGTATATGTTCCTAAGGGGAG TTTCTTGATCAAACCTGTAGTGTTTGGTGGTCCATGCAAGAATAAAATATTGTTCTCCATTGATGGAACAATTGTGGCACCATCAAATTACTGGGTTTTC GGCAATTCTGGATTTTGGATTTTGTTCTACAAGGTCACTGGGGTTACTGTTTATGGTGGCACTATTGATGCAAAAGGAGGTAGCTTTTGGGCTTGCCGGA ATGCTGGAAAAAATTGTCCACCAGGAGCTAGGTCCATGTCATTTGTGGCATCTAGCAACATCATGGTTAGCAGATTAACATCAATCAACAGTCAAATGTT TCACATTTCTATAGACCAGTGCCATAACATTACACTTGAAAACATGAAGATTAGTGCCCCCAGTTGGAGTCCCAACACCGATGGCATACACATGCAATCT TCAACTGGAATTTCCATCACCAACAGTATGATAAAGACAGGAGATGATTGCATATCCATAGGTCCAGGCTCCAAGAATTTGAGGATCCATCGCATTGTTT GTGGTCCTGGACATGGAATAAGCATTGGTAGTCTAGCCCTGCATCAAAATGAAGATGGTGTGGAGAATGTGAAGGTAACGAGTGTTGTTTTCATGGGTAC TCAAAACGGAGTTAGGATAAAATCATGGGGAAGACCAAGCACAGGGTATGCTCGAAACATTGTTTTTGAAAACATTATCATGAAATATGTCTATAATCCA ATCATCATTGATCAAAACTACTGCCCTAGCGCCAAAGGTTGTCCTAAGCATAGCTCTGGAGTGAAGATTAGTGGAGTGACATATAAGAACATAAAGGGAA CATCAGCCACACAATTGGCAATGAATTTTGTTTGCAGCTCAAGTAATCCATGTAAAGGACTCATATTGGAAGACATAAACCTAACATATTACAAAAAATC AGGTGCTGCCACATCGTTTTGTAAGAATGCAAATGGGAGCAAAAAGGGAGTAGTGATTCCCCCGAGTTGTTTGTGA
AA sequence Show only first row Show all	>Potri.017G006400.1 pacid=42814417 polypeptide=Potri.017G006400.1.p locus=Potri.017G006400 ID=Potri.017G006400.1.v4.1 annot-version=v4.1 MVKIILVYCVLFLLFAASYQASNVVYNVVKLGAKPDGKIDSTEAFKKAWTLACSSTWPAMVYVPKGSFLIKPVVFGGPCKNKILFSIDGTIVAPSNYWVF GNSGFWILFYKVTGVTVYGGTIDAKGGSFWACRNAGKNCPPGARSMSFVASSNIMVSRLTSINSQMFHISIDQCHNITLENMKISAPSWSPNTDGIHMQS STGISITNSMIKTGDDCISIGPGSKNLRIHRIVCGPGHGISIGSLALHQNEDGVENVKVTSVVFMGTQNGVRIKSWGRPSTGYARNIVFENIIMKYVYNP IIIDQNYCPSAKGCPKHSSGVKISGVTYKNIKGTSATQLAMNFVCSSSNPCKGLILEDINLTYYKKSGAATSFCKNANGSKKGVVIPPSCL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G05660			Pectin lyase-like superfamily ...		Potri.017G006400 [exp]	0	1
AT3G52970		CYP76G1	"cytochrome P450, family 76, s...		Potri.005G030100 [exp]	3.74	0.9595	CYP76G5
AT2G29120		ATGLR2.7	GLUTAMATE RECEPTOR 2.7, gluta...		Potri.018G013000 [exp]	5.09	0.9162
AT5G22860			Serine carboxypeptidase S28 fa...		Potri.010G232300 [exp]	6.24	0.9512
					Potri.001G405600 [exp]	6.78	0.9587
AT4G17340		TIP2;2, DELTA-T...	tonoplast intrinsic protein 2;...		Potri.001G157000 [exp]	8.94	0.9481	TIP2.6
AT1G68040			S-adenosyl-L-methionine-depend...		Potri.008G136200 [exp]	9.48	0.9322
AT4G30170			Peroxidase family protein (.1)		Potri.018G089900 [exp]	12.48	0.9495
AT5G06070	C2H2ZnF	RAB, RBE	RABBIT EARS, C2H2 and C2HC zin...		Potri.010G199800 [exp]	12.96	0.9480
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Potri.003G178900 [exp]	17.43	0.9378
AT2G41705			camphor resistance CrcB family...		Potri.002G086800 [exp]	22.64	0.9230

Compare expression of checked genes

Potri.017G006400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.