Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G31820 868 / 0 Ankyrin repeat family protein (.1) AT1G05640 798 / 0 Ankyrin repeat family protein (.1) AT5G60070 545 / 0 ankyrin repeat family protein (.1) AT1G07710 544 / 0 Ankyrin repeat family protein (.1) AT5G02620 480 / 3e-164 ATANK1, ANK1 ankyrin-like1 (.1) AT3G12360 383 / 1e-125 ITN1 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) AT2G01680 379 / 6e-125 Ankyrin repeat family protein (.1) AT3G09550 360 / 2e-116 Ankyrin repeat family protein (.1) AT5G54710 159 / 2e-41 Ankyrin repeat family protein (.1) AT1G34050 138 / 2e-34 Ankyrin repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G145200 [exp] 1065 / 0 AT2G31820 751 / 0.0 Ankyrin repeat family protein (.1) Potri.007G099600 [exp] 532 / 0 AT1G07710 745 / 0.0 Ankyrin repeat family protein (.1) Potri.006G214600 [exp] 522 / 2e-180 AT1G07710 565 / 0.0 Ankyrin repeat family protein (.1) Potri.005G069300 [exp] 518 / 6e-179 AT1G07710 695 / 0.0 Ankyrin repeat family protein (.1) Potri.016G080700 [exp] 510 / 8e-176 AT1G07710 570 / 0.0 Ankyrin repeat family protein (.1) Potri.005G069400 [exp] 492 / 8e-169 AT1G07710 676 / 0.0 Ankyrin repeat family protein (.1) Potri.010G106800 [exp] 405 / 7e-135 AT2G01680 778 / 0.0 Ankyrin repeat family protein (.1) Potri.008G048400 [exp] 402 / 5e-133 AT3G12360 862 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Potri.010G212700 [exp] 399 / 1e-131 AT3G12360 858 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008329 [exp] 887 / 0 AT2G31820 854 / 0.0 Ankyrin repeat family protein (.1) Lus10027074 [exp] 664 / 0 AT2G31820 626 / 0.0 Ankyrin repeat family protein (.1) Lus10015224 [exp] 561 / 0 AT1G07710 727 / 0.0 Ankyrin repeat family protein (.1) Lus10005432 [exp] 560 / 0 AT1G07710 720 / 0.0 Ankyrin repeat family protein (.1) Lus10024440 [exp] 485 / 7e-166 AT1G07710 618 / 0.0 Ankyrin repeat family protein (.1) Lus10025289 [exp] 459 / 3e-156 AT1G07710 577 / 0.0 Ankyrin repeat family protein (.1) Lus10003308 [exp] 407 / 1e-134 AT3G12360 981 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Lus10023460 [exp] 386 / 4e-127 AT3G12360 929 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Lus10034579 [exp] 383 / 5e-126 AT2G01680 768 / 0.0 Ankyrin repeat family protein (.1) Lus10021814 [exp] 382 / 7e-126 AT2G01680 771 / 0.0 Ankyrin repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [poplar] [flax] Ank PF12796 [poplar] [flax] Ank_2 Ankyrin repeats (3 copies) CL0465 [poplar] [flax] PF13962 [poplar] [flax] PGG Domain of unknown function
Representative CDS sequence Show only first row Show all	>Potri.017G006800.1 pacid=42813795 polypeptide=Potri.017G006800.1.p locus=Potri.017G006800 ID=Potri.017G006800.1.v4.1 annot-version=v4.1 ATGGAGAGACAAAGCAGTTTCAATGGAAGAACAATGGAAAAGCAGCAGAGTTTTCGTGGAATAACAAACAAACAGAAAGTGTATGAAAAGCAAGTGAGTT TTCAAGGAATACCAAATAAACAGAAGGTGATGGAAAAACACCCGAGTTTTCATGGTGTGACAGAAAATGGGTCAACTTCTCATGGGGTGATGGAAAAACA CCCCAGTTTTCGTGGAGTAGAGAAGGGTTTTCGTGGATTTCTGGAGAAACAGAAGAGCTTTCGTGTGGTGATGGAGAGACAACTTAGTTTTATTGGTGGT GGTGAGAGGAAAAGGCCTAAAGATTCACCTGGAAAGCGAGGAGACTCACAAATTCATTTGGCAGCACGTACGGGGAATTTGAGTAGAGTTAGAGAGATTC TTCAGAATTCTGATGGTAATGACTTGAAGGTTCTGTTGGCAACGCAGAATCAAGACGGAGAAACTCCCCTTTATGCAGCAGCAGAGAATGGGCATGCTGG GGTTGTTGCTAAAATGCTGGAATATATGAACCTGGAGACTGCATCTGTTGCCGCTAGGAATGGGTATGATCCATTCCACGTGGCTGCAAAGCAGGGTCAT CTTGATGTCTTGACAGAACTTTTGCGTGTATTCCCCAACTTGGTCATGACAACAGATTTATCCTGTACAACTGCTCTACACACAGCTGCGACTCAAGGGC ACATTGATGTGGTCAATCTTCTTTTAGAAACAGATGTAAATCTTGTTAAGATTGCCCGGAATAATGGTAAGACTGTCCTCCATTCAGCTGCAAGGATGGG GCACTTGGAAATTGTGAGGTCCCTCCTAAGTAAGGATCCAAGCACTGGTTTTAGAACGGATAAAAAAGGACAAACTGCACTGCACATGGCTGTGAAAGGG CAAAATGAGGAAATTGTGCTAGAATTGCTAAAACCTGACCGCACTGTTATGCATGTGGAAGACAATAAGGGAAACACGGCATTGCATATTGCAGTTATGA AAGGCCGTACTCAGAATGTGCATTGTCTGTTATCGGTTGAGGGTATTAACATCAATGCCATTAACAAAGCTGGAGAGACCCCACTTGACATTGCAGAAAA ACTTGGAATTCAAGAGCTTGTCTCCATTTTAAAGAAAGCAGGGGCTAACAATTCCAAAGACTGTGGAAAGCCCCCAAATGCAGCAAAGCAACTAAAGCAG ACTGTCAGTGACATAAAACATGATGTCCAGTCCCAGCTCCAACAGACCCGTCAAACTGGCTTCAGAGTGCAGAAAATCGCCAAGAAGCTGAAGAAGCTCC ACATTAGTGGCCTCAACAATGCTATAAACAATTCGACTATTGTTGCAGTTCTCATTGCAACAGTTGCTTTTGCAGCCATTTTCACCGTCCCTGGCCAGTA TGTTGAGGAGAAGATCGAGGGAGCTGCAATTGGGCAAGCCAATGTAGCAAGAAATCCTGCTTTCTTAGTCTTCTTTGTATTTGACAGCCTGGCATTATTC ATCTCTCTGGCTGTCGTTGTGGTGCAAACATCTATTGTTGTGATTGAACAAAAGGCAAAGAAGCAGCTTGTGTTTGTTATTAACAAACTCATGTGGCTTG CTTGCCTCTTCATTTCAGCAGCCTTTATTTCTCTTACTTATGTGGTGGTGGGTAAGAATTCCAGGTGGCTTGCTATCTATGCAACAGTCATTGGTGGCTT AATCATGCTCGCTACGATCGGCTCCATGTGCTACTGTGTCGTTTTACATCAGATGGAAGAATCAAAGTTAAGGAATATAAGGAGGGAAACTCGGCCTGGT TCTTATTCTATGTCTGTGGAATCAGATCAAGAGATTTTGAACAGCGAATATAGGAGGATGTATGCACTCTGA
AA sequence Show only first row Show all	>Potri.017G006800.1 pacid=42813795 polypeptide=Potri.017G006800.1.p locus=Potri.017G006800 ID=Potri.017G006800.1.v4.1 annot-version=v4.1 MERQSSFNGRTMEKQQSFRGITNKQKVYEKQVSFQGIPNKQKVMEKHPSFHGVTENGSTSHGVMEKHPSFRGVEKGFRGFLEKQKSFRVVMERQLSFIGG GERKRPKDSPGKRGDSQIHLAARTGNLSRVREILQNSDGNDLKVLLATQNQDGETPLYAAAENGHAGVVAKMLEYMNLETASVAARNGYDPFHVAAKQGH LDVLTELLRVFPNLVMTTDLSCTTALHTAATQGHIDVVNLLLETDVNLVKIARNNGKTVLHSAARMGHLEIVRSLLSKDPSTGFRTDKKGQTALHMAVKG QNEEIVLELLKPDRTVMHVEDNKGNTALHIAVMKGRTQNVHCLLSVEGININAINKAGETPLDIAEKLGIQELVSILKKAGANNSKDCGKPPNAAKQLKQ TVSDIKHDVQSQLQQTRQTGFRVQKIAKKLKKLHISGLNNAINNSTIVAVLIATVAFAAIFTVPGQYVEEKIEGAAIGQANVARNPAFLVFFVFDSLALF ISLAVVVVQTSIVVIEQKAKKQLVFVINKLMWLACLFISAAFISLTYVVVGKNSRWLAIYATVIGGLIMLATIGSMCYCVVLHQMEESKLRNIRRETRPG SYSMSVESDQEILNSEYRRMYAL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G31820			Ankyrin repeat family protein ...		Potri.017G006800 [exp]	0	1
AT5G17230		PSY	PHYTOENE SYNTHASE (.1.2.3)		Potri.017G138900 [exp]	1.00	0.9115
AT3G60810			unknown protein		Potri.002G148400 [exp]	1.41	0.8902
AT4G08850			Leucine-rich repeat receptor-l...		Potri.012G124100 [exp]	4.24	0.8639
AT1G61110	NAC	ANAC025	NAC domain containing protein ...		Potri.004G038000 [exp]	4.69	0.8335	NAC005
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.004G017600 [exp]	6.00	0.8493
AT1G16490	MYB	ATMYB58	myb domain protein 58 (.1)		Potri.019G118800 [exp]	7.21	0.8187
AT1G69010	bHLH	bHLH102, BIM2	BES1-interacting Myc-like prot...		Potri.017G101700 [exp]	7.87	0.8139
AT4G31980			unknown protein		Potri.003G206501 [exp]	7.93	0.8229
AT4G29130		GIN2, ATHXK1	GLUCOSE INSENSITIVE 2, ARABIDO...		Potri.018G088300 [exp]	11.22	0.8423	HXK1.1
AT4G36810		GGPS1	geranylgeranyl pyrophosphate s...		Potri.007G031100 [exp]	20.59	0.7737

Compare expression of checked genes

Potri.017G006800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.