Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05630 1510 / 0 AT5PTASE13, 5PTASE13 Endonuclease/exonuclease/phosphatase family protein (.1.2) AT2G43900 1496 / 0 Endonuclease/exonuclease/phosphatase family protein (.1) AT2G31830 1316 / 0 endonuclease/exonuclease/phosphatase family protein (.1.2) AT1G65580 1161 / 0 FRA3 FRAGILE FIBER3, Endonuclease/exonuclease/phosphatase family protein (.1) AT2G01900 131 / 3e-32 DNAse I-like superfamily protein (.1) AT2G37440 120 / 2e-28 DNAse I-like superfamily protein (.1.2) AT3G63240 120 / 7e-28 DNAse I-like superfamily protein (.1) AT2G32010 120 / 1e-27 CVL1 CVP2 like 1 (.1.2) AT1G05470 117 / 6e-27 CVP2 COTYLEDON VASCULAR PATTERN 2, DNAse I-like superfamily protein (.1) AT1G34120 115 / 4e-26 AT5PTASE1, ATIP5PI, AT5P1, IP5PI MYO-INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 1, inositol polyphosphate 5-phosphatase I (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G145100 [exp] 1937 / 0 AT2G43900 1511 / 0.0 Endonuclease/exonuclease/phosphatase family protein (.1) Potri.010G177400 [exp] 1335 / 0 AT1G65580 1490 / 0.0 FRAGILE FIBER3, Endonuclease/exonuclease/phosphatase family protein (.1) Potri.008G079300 [exp] 1254 / 0 AT1G65580 1475 / 0.0 FRAGILE FIBER3, Endonuclease/exonuclease/phosphatase family protein (.1) Potri.003G088300 [exp] 128 / 3e-30 AT4G18010 615 / 0.0 INOSITOL\(1,4,5\)P3 5-PHOSPHATASE II, myo-inositol polyphosphate 5-phosphatase 2 (.1.2) Potri.008G155700 [exp] 121 / 3e-28 AT2G32010 914 / 0.0 CVP2 like 1 (.1.2) Potri.007G090200 [exp] 114 / 7e-26 AT5G65090 671 / 0.0 DEFORMED ROOT HAIRS 4, BRISTLED 1, DNAse I-like superfamily protein (.1.2) Potri.002G063500 [exp] 114 / 1e-25 AT1G71710 631 / 0.0 DNAse I-like superfamily protein (.1.2) Potri.010G084300 [exp] 112 / 2e-25 AT2G32010 865 / 0.0 CVP2 like 1 (.1.2) Potri.015G032200 [exp] 109 / 8e-25 AT2G01900 476 / 1e-166 DNAse I-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008330 [exp] 1433 / 0 AT2G43900 1477 / 0.0 Endonuclease/exonuclease/phosphatase family protein (.1) Lus10027073 [exp] 1377 / 0 AT2G43900 1455 / 0.0 Endonuclease/exonuclease/phosphatase family protein (.1) Lus10041607 [exp] 1252 / 0 AT1G65580 1398 / 0.0 FRAGILE FIBER3, Endonuclease/exonuclease/phosphatase family protein (.1) Lus10024112 [exp] 667 / 0 AT1G65580 733 / 0.0 FRAGILE FIBER3, Endonuclease/exonuclease/phosphatase family protein (.1) Lus10024113 [exp] 597 / 0 AT1G65580 672 / 0.0 FRAGILE FIBER3, Endonuclease/exonuclease/phosphatase family protein (.1) Lus10006597 [exp] 125 / 2e-30 AT2G32010 581 / 0.0 CVP2 like 1 (.1.2) Lus10039352 [exp] 125 / 3e-29 AT2G32010 894 / 0.0 CVP2 like 1 (.1.2) Lus10028697 [exp] 123 / 2e-28 AT1G71710 675 / 0.0 DNAse I-like superfamily protein (.1.2) Lus10028727 [exp] 119 / 4e-27 AT1G71710 674 / 0.0 DNAse I-like superfamily protein (.1.2) Lus10008934 [exp] 108 / 6e-26 AT5G04980 395 / 3e-138 DNAse I-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0530 [poplar] [flax] DNase_I-like PF03372 [poplar] [flax] Exo_endo_phos Endonuclease/Exonuclease/phosphatase family
Representative CDS sequence Show only first row Show all	>Potri.017G006900.2 pacid=42812860 polypeptide=Potri.017G006900.2.p locus=Potri.017G006900 ID=Potri.017G006900.2.v4.1 annot-version=v4.1 ATGGGTCAGGATAGAAATGTTGACATTTTTGAAGATGAAGATAAGGAGGCTTTAAAAGGGCTATCTCCTGTCCCTCTGCCGCCGCGAAATATCCACTCTC ATAGCCAGCAGCTACGTGCAACCTCTTCAGGACCTACTACTAAAAAACACCATCCAGGTACAAGAAAGCACAGTCTTGATGACATCCCTAAACCTGTGCT TTCTGATCCTTTTTATTATGAATCTTCTTCCGAGGACGATGAATTCTGCCCACGCTCCTCTTCTCCTTCTAACACCACCCGTTCTCGTGGTGGCAGCGGT GAAGATTTCTTCGTTGGTACTGCTGAGGATGATCAACTCATGCAATTCCAACCATTGCCTGAGTTCATTGCAAATGGTGGCGGGACTGGAATCTTTAAGT TTCCAACACGTTCAGCTGTGCACGCTGGCCGACCGCCTTGTCTAGAACTTAGGCCACATCCTTTGAGAGAAACTCAGGTGGGGAAGTTTTTGAGAAACAT TGCTTGTACCGATAAGCAGTTGTGGGCTGGTCAGGAGTGTGGGGTAAGGTTTTGGAGTTTTGAGGATGTATATGAGGCTGGAAGTGGATTAGGTGGGAGA GCGAGAAGGGGTGATGAAGATGCTGCACCATTTTTTGAGTCAGGGAATACCTCACCTACAATGTGTTTAATCATTGACAGTGCAAATAGATTGGTTTGGA GCGGGCACAAAGATGGGAAGATTAGGTCCTGGAAAATGGATCAACATTTAGATGATGCTAATTCTCATTTTAAGGAAGGATTATCGTGGCAGGCTCATAA GGGTCCTGTTCTTTCTATAGTTATGAGCTCTTTTGGTGATCTGTGGTCGGGTGGTGAGAATGGTGTTGTTAGGATTTGGCCATGGGATGCCATTGAGAAA TCTCTTTCTCTTTCACCAGAGGAAAAACATATGGCTGCTTTATTGGTGGAGAGGTCTTTCATTGACCTCAGGAGCCAAGTCACTGTAAATGGTGCCTGTA GCATATCTTCTTCAGATATAAAGTGCTTGTTAGCTGACAATGTTAGAGCTAAAATTTGGTGTGCTCAGCCTCTTTCCTTCTCTCTTTGGGATGCTCGTAC AAAGGAGCTTCTGAAGGTATTCAATACTGAGGGTCAAATTGAGAATCGAGCTGACCTGCCATCAGTGCAACAGCAAGACCAGCCAGTAGAAGATGAGATG AAGGTAAAATTTGTAGTCCCATCGAAAAAGGAGAAATCTGGGGGATTTCTGCAACGTTCACGTAATGCTATAATGGGAGCAGCAGATGCTGTTCGCCGAG TTGCAACCAGGGGAGCAGGAGCATTCGCAGATGATGCCAAGAGAACAGAAGCACTAGTGCTGACTATAGATGGAATGATCTGGAGTGGATGTCCTAATGG CCTTCTTGTGCAGTGGGATGGGAGTGGAAATCGTTTACTAGAATTTAATCATCATTCTTCTGCTGTCCAATGTTTTTGCACTTTTGGAACACAGATATAT GTTGGCTACGCAAGCGGTGTTATCCAAGTATTGGACCTGGAGGGAAAATTGATTTGTGCATGGGTTGCTTACAGTAATCCTGTGCTAAAACTGGCAGTTG GAAATGGATATGTTTTTAGCTTGGCAAATCATGGTGGCATACGTGGATGGAGCATTGCATCTCCAGGACCTATTGACAGAATAATACGATCAGAAGTAGC ATCGAAAGAACTAGAGTATACAAGAAGAAATAGTTTCAGAATTTTAGTTGGTACATGGAATGTCGGTCAAGGAAGAGCATCCCAGGATGCACTTAAAGCA TGGTTAGGTTCTACTGCATCAGACGTTGGCATTATTGTTATTGGGTTACAAGAAGTAGAGATGGGTGCAGGTTTTCTTGCAATGTCTGCTGCAAAAGAAA CAGTAGGACTTGAAGGGAGTGCCATTGGTCAGTGGTGGCTGGACAATATAGGAAAAGCCTTAGATGAAGGAATGGCTTTTGAACGTATGGGTTCCAGGCA GCTTGCAGGCTTGCTCATATCTCTTTGGGTAAGAAAGAATCTCAGAAAACATGTTGGTGATGTTGATGCTGGGGCAGTTCCATGCGGCTTTGGACGAGCA ATTGGCAATAAGGGAGGTGTAGGTTTGAGAATTAGAGTTCTCGACAGGATCATGTGCTTTGTTAACTGTCACTTGGCTGCACATTTGGAAGCAGTCAATC GGCGCAATGCTGATTTTGATCATATTTTTCGAAATATGTCCTTTGGTCGGTCATCAAACCCTGCGGCAGCTGGTATGGTGCGATTCCTGTTTTTGTGTTG CGTTCTTGCCTTCTCCACATTTTTATTTTGGCTGCTTTATGTTTCTGGCTTCCCCCTGGTCCTATCTATTGCAGCTGGTGTCTCAACTGCCAGTCACACA ATTAAGGGAACAAATGCTGCTAGTGCCAACAATGAAGAGCCAAAGCTTGATTTAGCTGAAGCAGATATGGTGGTATTTCTTGGTGATTTTAATTACAGGC TTTTTGGTATATCATACGATGAAGCAAGGGACCTTGTTTCACAAAGAAGCTTTGACTGGCTTCGAGAAAAGGATCAGCTCAGAGCAGAGATGCAGGCAGG GAAAGTTTTTCAAGGAATGCGTGAGGCACTCATTGTGTTCCCTCCTACTTACAAGTTTGCAAGAAACCAACCAGGTTTAGGAGGATATGATTCTGGGGAG AAAAAGCGAATTCCAGCATGGTGTGACAGAATAATATACCGTGACAATCGATCAGCTCCAGTGTCCGAATGCAGTTTAGACTGCCCTGTGGTCTCATCAG TTATACAGTATGGAGCTTGCATGGATGTCATAGAGAGTGATCACAAACCTGTCCGCTGCAAGTTTCATGTTCAAGTTGCCCATGTTGATAGATCAGTTAG GAGACAAGAATTTGGATTAGTTGTCAGGTCCAATGAGAAAGTCAGGTCTATTCTTGAGCAATTGCGTTATGTACCAGAAACCACTGTCAGCACCAACATC ATCCGCCTTCAAAGCCAGGACACAGTCATCTTGCGAATCACCAACAAAGACGTGAAAGAAAAGGCTATATTCAGAATTGTTTGTGCAGGTGTTTGCACTG TCAACGAGGATGAAGACGAGAGTACTTATCATTCACGGGGTTCTTATGGCTTTCCAAGATGGCTCGAGGTCACACCAGCAGCAGGCATAATTAAACAAGA TCACTTTGTGGATATCTCAGTACATCATGAAGAGTTCCATTCCTTAGAAGAGCATTTTGATGGAATCCCACAAAACTGGTGGTGCGAAGATACACGAGAC AAGGAAGCTATGTTGTCTGTGAATATCCAGGGCAGTAACGCAACAGGAATACAAAGTCACCAAATCATCGTTAGACACTGCTACTCTGCCAAGACAGTGC GTATCGACTCTATATCGAACAATTCTCGGAAAGGCCAAGGAGGCTCTGTTCACCGGTCTGACCTTAGGCAACAAAGTGGTTCCTCTGATGCTGTTGATGA TTTCCGAGATTTTTGA
AA sequence Show only first row Show all	>Potri.017G006900.2 pacid=42812860 polypeptide=Potri.017G006900.2.p locus=Potri.017G006900 ID=Potri.017G006900.2.v4.1 annot-version=v4.1 MGQDRNVDIFEDEDKEALKGLSPVPLPPRNIHSHSQQLRATSSGPTTKKHHPGTRKHSLDDIPKPVLSDPFYYESSSEDDEFCPRSSSPSNTTRSRGGSG EDFFVGTAEDDQLMQFQPLPEFIANGGGTGIFKFPTRSAVHAGRPPCLELRPHPLRETQVGKFLRNIACTDKQLWAGQECGVRFWSFEDVYEAGSGLGGR ARRGDEDAAPFFESGNTSPTMCLIIDSANRLVWSGHKDGKIRSWKMDQHLDDANSHFKEGLSWQAHKGPVLSIVMSSFGDLWSGGENGVVRIWPWDAIEK SLSLSPEEKHMAALLVERSFIDLRSQVTVNGACSISSSDIKCLLADNVRAKIWCAQPLSFSLWDARTKELLKVFNTEGQIENRADLPSVQQQDQPVEDEM KVKFVVPSKKEKSGGFLQRSRNAIMGAADAVRRVATRGAGAFADDAKRTEALVLTIDGMIWSGCPNGLLVQWDGSGNRLLEFNHHSSAVQCFCTFGTQIY VGYASGVIQVLDLEGKLICAWVAYSNPVLKLAVGNGYVFSLANHGGIRGWSIASPGPIDRIIRSEVASKELEYTRRNSFRILVGTWNVGQGRASQDALKA WLGSTASDVGIIVIGLQEVEMGAGFLAMSAAKETVGLEGSAIGQWWLDNIGKALDEGMAFERMGSRQLAGLLISLWVRKNLRKHVGDVDAGAVPCGFGRA IGNKGGVGLRIRVLDRIMCFVNCHLAAHLEAVNRRNADFDHIFRNMSFGRSSNPAAAGMVRFLFLCCVLAFSTFLFWLLYVSGFPLVLSIAAGVSTASHT IKGTNAASANNEEPKLDLAEADMVVFLGDFNYRLFGISYDEARDLVSQRSFDWLREKDQLRAEMQAGKVFQGMREALIVFPPTYKFARNQPGLGGYDSGE KKRIPAWCDRIIYRDNRSAPVSECSLDCPVVSSVIQYGACMDVIESDHKPVRCKFHVQVAHVDRSVRRQEFGLVVRSNEKVRSILEQLRYVPETTVSTNI IRLQSQDTVILRITNKDVKEKAIFRIVCAGVCTVNEDEDESTYHSRGSYGFPRWLEVTPAAGIIKQDHFVDISVHHEEFHSLEEHFDGIPQNWWCEDTRD KEAMLSVNIQGSNATGIQSHQIIVRHCYSAKTVRIDSISNNSRKGQGGSVHRSDLRQQSGSSDAVDDFRDF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G05630		AT5PTASE13, 5PT...	Endonuclease/exonuclease/phosp...		Potri.017G006900 [exp]	0	1
AT5G18980			ARM repeat superfamily protein...		Potri.010G029300 [exp]	7.21	0.8032
AT5G63390			O-fucosyltransferase family pr...		Potri.012G095166 [exp]	7.54	0.7275
AT4G30470			NAD(P)-binding Rossmann-fold s...		Potri.006G178700 [exp]	8.77	0.7365
AT3G14000		ATBRXL2, BRX-LI...	DZC (Disease resistance/zinc f...		Potri.001G170800 [exp]	9.48	0.7768
AT4G00210	AS2	LBD31	LOB domain-containing protein ...		Potri.002G148900 [exp]	10.58	0.7886
AT2G27990	HD	PNF, BLH8	POUND-FOOLISH, BEL1-like homeo...		Potri.009G009800 [exp]	13.03	0.7714
AT1G22540			Major facilitator superfamily ...		Potri.013G107050 [exp]	15.90	0.7091
AT3G53480		PIS1, ABCG37, P...	polar auxin transport inhibito...		Potri.008G099000 [exp]	16.49	0.7725
AT1G05065		CLE20	CLAVATA3/ESR-RELATED 20 (.1)		Potri.002G226300 [exp]	16.73	0.7188
AT1G10150		ATPP2-A10	Carbohydrate-binding protein (...		Potri.014G006800 [exp]	19.18	0.7588

Compare expression of checked genes

Potri.017G006900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.