Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G43940 296 / 5e-102 ATHOL3, HOL3 HARMLESS TO OZONE LAYER 3, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G43910 280 / 1e-95 ATHOL1, HOL1, HOL HARMLESS TO OZONE LAYER 1 (.1.2.3) AT2G43920 268 / 4e-91 ATHOL2, HOL2 HARMLESS TO OZONE LAYER 2, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008335 [exp] 319 / 9e-105 AT1G70250 316 / 8e-98 receptor serine/threonine kinase, putative (.1) Lus10027086 [exp] 190 / 7e-56 AT2G43940 163 / 5e-46 HARMLESS TO OZONE LAYER 3, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF13847 [poplar] [flax] Methyltransf_31 Methyltransferase domain
Representative CDS sequence Show only first row Show all	>Potri.017G007000.1 pacid=42812875 polypeptide=Potri.017G007000.1.p locus=Potri.017G007000 ID=Potri.017G007000.1.v4.1 annot-version=v4.1 ATGCAACTGTGGATTGGCGCCACAAATCTGAGGATGGACAAGAAGAGAGAAGAAGGAAAGGAGCCGATTGCAAAGGAGAGAGAGGGCAGTGTTAAATTCA AGCCTGAGGTTCATCAAATGCAAAAACTCGTAACCACCGAGACGTCTGGCGGTTGGGAGAATTGTTGGGAGCAGGGATTGACACCATGGGATTTAGGACG CCCAACACCTATTATCTTACATCTTCATCAGACAGGTGCCCTTCCTAAGGGCAGGGCTTTAGTCCCTGGATGTGGCTCTGGTTATGATGTGGTAGCAATG GCATGCTCTGAACGCTATGTTGTTGGATTGGACGTCTCGCACACGGCTATTGAGAAAGCAATAGAGTTGTCTTCCTCATTACCAAATTCAAGTTACTTTA CATTCTTGAAGGCAGACTTCTTCACTTGGCATCCACCTGAGTTGTTTGATCTCATTTTCGATTACACGTTCTTCTGTGCTATCGAACCAGGGATGAGATC AAGATGGGCATGCAAAGTTCAAGAAATGTTGAAACCTGATGGAGAGCTCATAACACTGATGTATCCGATCAGCGATCATGTTGGTGGGCCCCCGTATAAA GTATCAGTCTCCGACTATGAAGAGGTGTTGCATCCCATGGGCTTCAAGGCAGTAACCATTGTTGATAACGAACTTGCTATCGAAGCTCGCAAGGGAAGAG AGAAATTTGGAAGATGGAGGAGGGATACAACCCAATCCATACTTTGA
AA sequence Show only first row Show all	>Potri.017G007000.1 pacid=42812875 polypeptide=Potri.017G007000.1.p locus=Potri.017G007000 ID=Potri.017G007000.1.v4.1 annot-version=v4.1 MQLWIGATNLRMDKKREEGKEPIAKEREGSVKFKPEVHQMQKLVTTETSGGWENCWEQGLTPWDLGRPTPIILHLHQTGALPKGRALVPGCGSGYDVVAM ACSERYVVGLDVSHTAIEKAIELSSSLPNSSYFTFLKADFFTWHPPELFDLIFDYTFFCAIEPGMRSRWACKVQEMLKPDGELITLMYPISDHVGGPPYK VSVSDYEEVLHPMGFKAVTIVDNELAIEARKGREKFGRWRRDTTQSIL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G43940		ATHOL3, HOL3	HARMLESS TO OZONE LAYER 3, S-a...		Potri.017G007000 [exp]	0	1
AT5G19430			RING/U-box superfamily protein...		Potri.001G275900 [exp]	1.41	0.8568
AT1G64850			Calcium-binding EF hand family...		Potri.013G072600 [exp]	1.73	0.8647
AT2G22540	MADS	AGL22, SVP	SHORT VEGETATIVE PHASE, AGAMOU...		Potri.002G105600 [exp]	4.24	0.8115
AT2G17695			unknown protein		Potri.005G105500 [exp]	5.19	0.8533
AT3G23280		XBAT35	XB3 ortholog 5 in Arabidopsis ...		Potri.008G167600 [exp]	9.38	0.7919
AT5G20060			alpha/beta-Hydrolases superfam...		Potri.018G070700 [exp]	13.03	0.8412
AT4G04830		ATMSRB5	methionine sulfoxide reductase...		Potri.008G198600 [exp]	22.58	0.7433	PtrMsrB3
AT4G09830			Uncharacterised conserved prot...		Potri.001G003400 [exp]	23.49	0.7868
AT1G07540	MYB	TRFL2	TRF-like 2 (.1)		Potri.006G086500 [exp]	24.65	0.8035
AT3G12290			Amino acid dehydrogenase famil...		Potri.011G098600 [exp]	25.37	0.7485

Compare expression of checked genes

Potri.017G007000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.