Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24450 533 / 0 Transcription factor IIIC, subunit 5 (.1) AT3G49410 532 / 0 Transcription factor IIIC, subunit 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G145000 [exp] 820 / 0 AT5G24450 461 / 1e-158 Transcription factor IIIC, subunit 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042710 [exp] 464 / 3e-161 AT3G49410 396 / 2e-134 Transcription factor IIIC, subunit 5 (.1) Lus10029672 [exp] 464 / 4e-161 AT3G49410 395 / 3e-134 Transcription factor IIIC, subunit 5 (.1) Lus10042709 [exp] 71 / 3e-14 AT3G49410 66 / 5e-13 Transcription factor IIIC, subunit 5 (.1) Lus10029671 [exp] 50 / 2e-07 AT3G49410 53 / 4e-09 Transcription factor IIIC, subunit 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF09734 [poplar] [flax] Tau95 RNA polymerase III transcription factor (TF)IIIC subunit HTH domain
Representative CDS sequence Show only first row Show all	>Potri.017G007200.4 pacid=42813796 polypeptide=Potri.017G007200.4.p locus=Potri.017G007200 ID=Potri.017G007200.4.v4.1 annot-version=v4.1 ATGGGAGTGATAAAAGAAGGAAAAGTGAGTGGATTGATACCAAGCAAAGAGGGTTTTGCAGTTCATTATCCAGGCTATCCTTCTTCAATATCTCGGGCTA TCCAAACTCTCGGAGGAACTGAATCAATTCTTAAGGCTCGTAGTTCACAATCTAATAAGTTGGAACTGTATTTTCGCCCTGAGGATCCATACTCGCATCC TGTGTCAGGAGAGCTTCGTTCTTGTCACAGTATGTTGCTGAAAATATCTAGAAAGAAGAAGAATTCTAGTCCCATTAATGAAGCAAAGGAAGAATCAGAG GAGTTTCATGCTGATATTGTTGCTAGAATACCAGAGGCTTATTACTTTGAGGGAATGGCTGACTACCAGCATGTTGTTCCAGTTCATGCTGATATTGCCA GGAGGAAGAGGAAGAATCCTAGTGAGATGGAGGAGCCACATTTTCAAAAAAAACCCGGTCTAATTGATATGGGTCCCGAGGATGTGATGATGCTATCGCC TCCACTTTTTTCACTCAAAGATGTGCCAGAAAATATAGTGTTAAGACCACCATCAACGTCAAGTTCAAAAAAGAAACAAGATGAACCTCCAGAAACCCAT TCAAAGATGACCTTTGAGCCAGCACTTGGTATTGATTTTAAAGATGTTCAAGAGATTCCTAAGAAAATAAATTGGAAGGAATTCATAACAGAAGGTACAC CAATGTGGGAGTGGCAGATAGCTGTATCTGAGCTGTTTGAGGAGCGGCCCATATGGCCCAAATATTCACTGATTGAACGCTTACTTGATAAAAATCTTAA ATTTACATATCAAACGCTTAAAAGGCTTCTGCTCACAGTTGGATACTACTTTTCAGGCGGACCATTTCAGAAGTTCTGGATCAGAAAAGGATATGATCCT CGCAAAGATCCTGATTCTCGCATATATCAAAGCGTTGCTTTTCGAGTACCACCTGAATTAAAAAGTTACTGTGATGATAATGCTGCTAAAGGCTTGAAGC ATAGATGGGAGGATTTGTGCAAATTTCGATTTTTTCCTTACAGAAACCAGTATTCGTTCCAGCTGTATGAACTTGATGATGATTACATTCAACAAGAGAT ACAAAAGCCTCCAAAGCAGACAAGTTGCACTTATGAAACAGGATGGTTCTCACAGCATGTGCATGATAGCTTGAGACTTTGTGTTAAGGTGAGGTTCCTA TCAATATTCCCAGAGACTGGCGCAGAAAAATTTCTTAAAGCTGCTTCTGAAAAATTTATGAAGTCAAAGAGAGCATGCATTTTCAAAGATGCACCAAAAC CAGTTCAGGAGGAGCATCAGCAAATTAATGAAGATCATGAAACCTTAAAAAACGATACAGAAGCTGTAGATGAAGCTATTGAAAATCAGATCGACACTGA TGATGTTGAGGTGGATGAACTCGATTCTGATGATGGTGAAGAGGAGTTTGATGTATATGGAATGGATTCGGCGGGTGAGGCAGATAATCTTTCGTTGAAT TCATATTCACATATGGAGAACACCTCCACAAGCTATCTGCAACAACTCTTGGGCAGTTTTCCATCGATGGACACCAATGGTGACAAAAAGCAAGATGGTG GTGAAAGTAGTGACGGGGAATATCAGATATACGAGCAGGATGACGATGAAAATTACCTTGATGACGATGATGACTGA
AA sequence Show only first row Show all	>Potri.017G007200.4 pacid=42813796 polypeptide=Potri.017G007200.4.p locus=Potri.017G007200 ID=Potri.017G007200.4.v4.1 annot-version=v4.1 MGVIKEGKVSGLIPSKEGFAVHYPGYPSSISRAIQTLGGTESILKARSSQSNKLELYFRPEDPYSHPVSGELRSCHSMLLKISRKKKNSSPINEAKEESE EFHADIVARIPEAYYFEGMADYQHVVPVHADIARRKRKNPSEMEEPHFQKKPGLIDMGPEDVMMLSPPLFSLKDVPENIVLRPPSTSSSKKKQDEPPETH SKMTFEPALGIDFKDVQEIPKKINWKEFITEGTPMWEWQIAVSELFEERPIWPKYSLIERLLDKNLKFTYQTLKRLLLTVGYYFSGGPFQKFWIRKGYDP RKDPDSRIYQSVAFRVPPELKSYCDDNAAKGLKHRWEDLCKFRFFPYRNQYSFQLYELDDDYIQQEIQKPPKQTSCTYETGWFSQHVHDSLRLCVKVRFL SIFPETGAEKFLKAASEKFMKSKRACIFKDAPKPVQEEHQQINEDHETLKNDTEAVDEAIENQIDTDDVEVDELDSDDGEEEFDVYGMDSAGEADNLSLN SYSHMENTSTSYLQQLLGSFPSMDTNGDKKQDGGESSDGEYQIYEQDDDENYLDDDDD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G24450			Transcription factor IIIC, sub...		Potri.017G007200 [exp]	0	1
AT2G40470	AS2	ASL11, LBD15	ASYMMETRIC LEAVES2-LIKE 11, LO...		Potri.013G081200 [exp]	2.82	0.8915
AT1G67980		CCOAMT	caffeoyl-CoA 3-O-methyltransfe...		Potri.008G136600 [exp]	3.46	0.8854
AT1G28590			GDSL-like Lipase/Acylhydrolase...		Potri.004G054300 [exp]	3.46	0.8913
AT3G14000		ATBRXL2, BRX-LI...	DZC (Disease resistance/zinc f...		Potri.001G170800 [exp]	4.58	0.8619
AT1G20270			2-oxoglutarate (2OG) and Fe(II...		Potri.002G016700 [exp]	5.00	0.8689
AT2G37710		RLK	receptor lectin kinase (.1)		Potri.009G036450 [exp]	5.29	0.8787
AT3G03210			unknown protein		Potri.004G080600 [exp]	5.65	0.8564
AT4G02510		TOC86, TOC160, ...	TRANSLOCON AT THE OUTER ENVELO...		Potri.010G014401 [exp]	7.34	0.8473
AT1G52330			Late embryogenesis abundant (L...		Potri.003G055000 [exp]	8.66	0.8139
AT1G20670			DNA-binding bromodomain-contai...		Potri.019G132601 [exp]	8.83	0.8640

Compare expression of checked genes

Potri.017G007200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.