Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G43970 306 / 2e-98 RNA-binding protein (.1.2) AT3G19090 196 / 6e-57 RNA-binding protein (.1) AT5G46250 164 / 3e-45 RNA-binding protein (.1.2.3) AT4G32720 58 / 5e-09 ATLA1 La protein 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G144800 [exp] 458 / 6e-158 AT2G43970 357 / 2e-117 RNA-binding protein (.1.2) Potri.004G144700 [exp] 210 / 9e-63 AT3G19090 363 / 3e-122 RNA-binding protein (.1) Potri.009G106500 [exp] 204 / 1e-60 AT3G19090 348 / 1e-116 RNA-binding protein (.1) Potri.011G080700 [exp] 148 / 4e-40 AT5G46250 325 / 5e-109 RNA-binding protein (.1.2.3) Potri.018G037900 [exp] 49 / 5e-06 AT4G32720 382 / 6e-130 La protein 1 (.1.2) Potri.006G241800 [exp] 49 / 6e-06 AT4G32720 403 / 3e-138 La protein 1 (.1.2) Potri.005G243600 [exp] 42 / 0.0007 AT5G66100 109 / 1e-25 winged-helix DNA-binding transcription factor family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025608 [exp] 353 / 1e-116 AT2G43970 332 / 2e-107 RNA-binding protein (.1.2) Lus10027080 [exp] 339 / 4e-111 AT2G43970 333 / 7e-108 RNA-binding protein (.1.2) Lus10012058 [exp] 199 / 7e-58 AT3G19090 427 / 2e-146 RNA-binding protein (.1) Lus10027925 [exp] 166 / 4e-47 AT3G19090 291 / 8e-96 RNA-binding protein (.1) Lus10023315 [exp] 156 / 5e-43 AT5G46250 331 / 4e-111 RNA-binding protein (.1.2.3) Lus10038494 [exp] 153 / 8e-42 AT5G46250 323 / 5e-108 RNA-binding protein (.1.2.3) Lus10022135 [exp] 58 / 8e-09 AT4G32720 389 / 6e-133 La protein 1 (.1.2) Lus10011685 [exp] 54 / 2e-07 AT4G32720 382 / 1e-128 La protein 1 (.1.2) Lus10038624 [exp] 53 / 3e-07 AT4G32720 360 / 3e-121 La protein 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF05383 [poplar] [flax] La La domain
Representative CDS sequence Show only first row Show all	>Potri.017G007400.1 pacid=42814565 polypeptide=Potri.017G007400.1.p locus=Potri.017G007400 ID=Potri.017G007400.1.v4.1 annot-version=v4.1 ATGGCACAACAAAATCAAGAAGAAGAAGAAGAGTTAGTGGCTGTAGTAGAATCTGTACCTGAAACCCTAGATCAATCTCCTTCTTCGTCTGATCCTTCGC TTTCTCGTAATGTTTCCTTTAGTAAACTCAACGCACAAGCTCCCGCCTTTGTCCCCACGCGCCCCCAACCTCAACCTCCTCCGCGATTGTCCGTGATCCC TCCCCCTCCCCCTCCTCCCGCGGGCATGATGCATATGTTCCCTCCGTCTCCGTTTCACGTTCCGATTCATGGCCCTGTTCCCTTGCCTCACGTCATCCCC GTTCCGAACCACCACCACCACAACAACCACCACCACCACCATAATCATCCCAATCAGCATCAACAGCAGTATGTTCCGGTTCGAAAGCATAATCAGCTGC ATAATTCTAAAAGGGTGCCGCAGCAATTTGAGGAAGAGGTTGAAGTGGTTGTGAATAAGGATGCAGCAGCTTCTTCGGATCATGCGGCTAAGAGTGATGA AGCTATGAATAAGCTGTTGAATCAGGTGGAGTATTATTTCAGTGATTTGAACTTGGCCACTACTGATCATCTTATGAGGTTTATCACCAAGGATCCTGAA GGATATGTGCCAATATCTGTTGTTGCTTCCTTTAAGAAGGTTAAAGCTGTCGTAAACAATAATTCTCAGCTTGCTACCATTCTGCGGAACTCAACAAAGC TTGTAGTTAGTGAAGATGGAAAGAAAGTAAGACGCCAGCATCCCTTAACTGAGTCAGATGTTGAGGAGTTGCAATCTCGTATAGTTGTTGCTGAAAATTT ACCCGAGGATCATTGCCACCAAAACCTCATGAAGATCTTTTCTGCTGTTGGGAGTGTGAAGACTATTCGCACCTGTCCACCTCAACCTTCTGGTGGAGCT TCTTCAGCATCTAGATCTGGAAAAGCTGATGGGATGCATTTCAGTAACAAGTTGCATGCATTTGTGGAATATGAGACTGTCGAGATTGCTGAGAAAGCAG TTGCTGAGCTAAATGATGAGGGAAACTGGAGGAGTGGTCTTAAGGTTCGGTTAATGCTCAAGCGTGGGGCACAAGGAAAGAAGGGGCATGATGGTCAAGG GCATTCTGAGGAAGATGAGGTTTCTGCTTTTGAGCAAATGCCGAATGAAAAGCTGACAGAAGATCAAGCCCAGCAGCCTGATGTCCATTCACATGAGCAT TCTGGAGAGGATCATGCCAATGACAAGGAAGGTGCACAGCGAAAGCGGAACCGGGGGCGGGGCAAGGGCCGTGGGCGAGGTCAATACCATCACAATAACC ACCACAGTAACCACGGGGGAACTCCCCCTTCAAATCCAGTTCTTGGTGAGCATCTGACAATGGCTAAGCAACCACCTGGGCCCCGAATGCCCGATGGCAC GAGAGGATTTGCAATGGGTCGAGGGAAACTAGTTGCTGTGAATATCGCATGA
AA sequence Show only first row Show all	>Potri.017G007400.1 pacid=42814565 polypeptide=Potri.017G007400.1.p locus=Potri.017G007400 ID=Potri.017G007400.1.v4.1 annot-version=v4.1 MAQQNQEEEEELVAVVESVPETLDQSPSSSDPSLSRNVSFSKLNAQAPAFVPTRPQPQPPPRLSVIPPPPPPPAGMMHMFPPSPFHVPIHGPVPLPHVIP VPNHHHHNNHHHHHNHPNQHQQQYVPVRKHNQLHNSKRVPQQFEEEVEVVVNKDAAASSDHAAKSDEAMNKLLNQVEYYFSDLNLATTDHLMRFITKDPE GYVPISVVASFKKVKAVVNNNSQLATILRNSTKLVVSEDGKKVRRQHPLTESDVEELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCPPQPSGGA SSASRSGKADGMHFSNKLHAFVEYETVEIAEKAVAELNDEGNWRSGLKVRLMLKRGAQGKKGHDGQGHSEEDEVSAFEQMPNEKLTEDQAQQPDVHSHEH SGEDHANDKEGAQRKRNRGRGKGRGRGQYHHNNHHSNHGGTPPSNPVLGEHLTMAKQPPGPRMPDGTRGFAMGRGKLVAVNIA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G43970			RNA-binding protein (.1.2)		Potri.017G007400 [exp]	0	1
AT3G62240	C2H2ZnF		RING/U-box superfamily protein...		Potri.013G004200 [exp]	3.60	0.7603
AT1G09230			RNA-binding (RRM/RBD/RNP motif...		Potri.019G031700 [exp]	4.24	0.8226
AT3G15280			unknown protein		Potri.001G398300 [exp]	4.89	0.8106
AT1G49320		ATUSPL1	unknown seed protein like 1 (....		Potri.009G114300 [exp]	5.65	0.8140
AT1G68490			unknown protein		Potri.012G056500 [exp]	10.58	0.7535
AT4G04630			Protein of unknown function, D...		Potri.004G014000 [exp]	12.84	0.8032
AT4G21620			glycine-rich protein (.1.2)		Potri.004G036500 [exp]	12.96	0.7887
AT1G76710		ASHH1 ,SDG26	ASH1-RELATED PROTEIN 1, ASH1 R...		Potri.005G195400 [exp]	13.74	0.7399
AT5G04770		CAT6, ATCAT6	ARABIDOPSIS THALIANA CATIONIC ...		Potri.001G150700 [exp]	14.49	0.7527	PtrCAT7
AT3G46130	MYB	PFG3, ATMYB111 ...	myb domain protein 48 (.1.2.3....		Potri.009G027300 [exp]	15.23	0.7758	MYB111.1,MYB023

Compare expression of checked genes

Potri.017G007400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.