Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48380 209 / 3e-61 BIR1 BAK1-interacting receptor-like kinase 1 (.1) AT1G27190 189 / 4e-54 Leucine-rich repeat protein kinase family protein (.1) AT1G69990 175 / 6e-49 Leucine-rich repeat protein kinase family protein (.1) AT3G28450 169 / 2e-46 Leucine-rich repeat protein kinase family protein (.1) AT5G07280 168 / 2e-45 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) AT3G13380 159 / 2e-42 BRL3 BRI1-like 3 (.1) AT1G55610 156 / 2e-41 BRL1 BRI1 like (.1.2) AT4G22130 153 / 3e-41 SRF8 STRUBBELIG-receptor family 8 (.1.2) AT4G39400 155 / 6e-41 DWF2, CBB2, BIN1, BRI1, ATBRI1 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) AT2G01950 150 / 2e-39 VH1, BRL2 VASCULAR HIGHWAY 1, BRI1-like 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G004400 [exp] 446 / 1e-155 AT5G48380 221 / 1e-65 BAK1-interacting receptor-like kinase 1 (.1) Potri.017G003400 [exp] 439 / 3e-153 AT5G48380 209 / 1e-61 BAK1-interacting receptor-like kinase 1 (.1) Potri.017G005150 [exp] 427 / 1e-148 AT5G48380 213 / 6e-63 BAK1-interacting receptor-like kinase 1 (.1) Potri.017G004900 [exp] 377 / 9e-129 AT5G48380 262 / 2e-81 BAK1-interacting receptor-like kinase 1 (.1) Potri.017G004216 [exp] 321 / 6e-104 AT5G48380 412 / 2e-136 BAK1-interacting receptor-like kinase 1 (.1) Potri.017G003800 [exp] 319 / 1e-103 AT5G48380 455 / 1e-153 BAK1-interacting receptor-like kinase 1 (.1) Potri.017G003251 [exp] 287 / 2e-93 AT5G48380 280 / 1e-88 BAK1-interacting receptor-like kinase 1 (.1) Potri.017G003601 [exp] 280 / 4e-92 AT5G48380 255 / 3e-80 BAK1-interacting receptor-like kinase 1 (.1) Potri.017G003101 [exp] 270 / 2e-85 AT5G48380 239 / 4e-71 BAK1-interacting receptor-like kinase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034279 [exp] 211 / 7e-66 AT5G48380 213 / 1e-64 BAK1-interacting receptor-like kinase 1 (.1) Lus10008743 [exp] 214 / 3e-63 AT5G48380 764 / 0.0 BAK1-interacting receptor-like kinase 1 (.1) Lus10002147 [exp] 214 / 5e-63 AT5G48380 755 / 0.0 BAK1-interacting receptor-like kinase 1 (.1) Lus10030811 [exp] 192 / 5e-55 AT1G27190 772 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033533 [exp] 172 / 8e-47 AT4G39400 1492 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10020835 [exp] 171 / 3e-46 AT4G39400 1486 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10013288 [exp] 153 / 2e-43 AT1G27190 390 / 2e-133 Leucine-rich repeat protein kinase family protein (.1) Lus10038875 [exp] 162 / 4e-43 AT5G07280 1248 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10014996 [exp] 158 / 8e-42 AT5G07280 1264 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10006817 [exp] 155 / 1e-40 AT4G39400 1356 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.017G007600.1 pacid=42814536 polypeptide=Potri.017G007600.1.p locus=Potri.017G007600 ID=Potri.017G007600.1.v4.1 annot-version=v4.1 ATGGCTCTTAATGCAAAACTAGCTCTGCTTCTGACTCTTTTCCTTAGTGTTGCTAGCAATGGATACAGTTCTTTGCAAGAGAACAACGCAAGTGATGATG AGCTTGGTGGCAGATTACCCCTGGTACCCAGCAAAGAGCTCTGGACGAAGTTCGATTCTTCATTCAAAAGTGGGTTTGTAATAGGTTATGTATTTTCTGC AGTTTCCCTTTTAACTATTTTCCTGTCCTATTGTGTGCCTTGGGCTCGTCTCAACAAGAGGAAAAGGAACAAGGTGATGATGAAGACACCAATGACGACG TCTTTGATGGAAAGGCAGGAGAAGAAGAGAAAAGAAGCCGACATCCAGATTTCGACGTTTGATCAGATGTTGATCGCAAGAATCAGTTTTGCTGAACTAC AGAAAGCAACCAACAGTTTCGACAGAGGCAAAGTCATCGGAGTTGGAAAGACGGGGACAGTATATAAGGCAGCACACCCTCATCTTCGTTTCACTGCCGT GAAGAGATTATTTGACTTCCAACATTTGGAAAAGCAATTCTTGTCTGAGTTAATGATTCTGGGCAAGTTTAGGCATAAGAACATAGTTCCACTCTTGGGA TTCTGCGTGGAATCGAGGGAAAGGATTTTGGTGTACCAATATATGCCAAATGGGAATCTCTATGATTGGTTACATCCTGTGAAAGGCGAGCCTAAGATCA TGGAGTGGCATTTTAGGGTTAACATCGCAGTTGGGATGGCAAGAGGTTTGGCATGGCTCCACAATCATAATACCCTCCAACTAGCTCATCTTAACTTAAG CTCAAGTTGCATCTTGCTTGACAAAAACTTCGAACCAAGGATATCCAATTTTGGAAGGGCAATGCACATCATGACCTCAAATGCCAGAATCTTCATGGCA AACATTGAGATGAGTGAATGGGATTTGACCAAAAGAGATGTCCATCAGCTTGGTGTTCTTCTTCTTGAGCTGATCACAGGAGAAGATCCTCTTAATAACA GTGGATTTTATCACAGTCTAGAAGGTAAGTTAGTGCAAAACAATTGTCTATTGAGTACTGTCTCGGCTGCACTGTATTGTGCGGTTGACAAATCTCTGCT CGGTCAAGGATTCGATCGTGAAGTCCTTTATTTTCTGAAGGTTGCCTGTAACTGTATTCAGCCTATTCCAAATCGAAGGCCAACAATGGTTGAAGTATAC AAAATGTTGATGGCCATCAAGAACACACATCCCGACATCTTGGGCTAA
AA sequence Show only first row Show all	>Potri.017G007600.1 pacid=42814536 polypeptide=Potri.017G007600.1.p locus=Potri.017G007600 ID=Potri.017G007600.1.v4.1 annot-version=v4.1 MALNAKLALLLTLFLSVASNGYSSLQENNASDDELGGRLPLVPSKELWTKFDSSFKSGFVIGYVFSAVSLLTIFLSYCVPWARLNKRKRNKVMMKTPMTT SLMERQEKKRKEADIQISTFDQMLIARISFAELQKATNSFDRGKVIGVGKTGTVYKAAHPHLRFTAVKRLFDFQHLEKQFLSELMILGKFRHKNIVPLLG FCVESRERILVYQYMPNGNLYDWLHPVKGEPKIMEWHFRVNIAVGMARGLAWLHNHNTLQLAHLNLSSSCILLDKNFEPRISNFGRAMHIMTSNARIFMA NIEMSEWDLTKRDVHQLGVLLLELITGEDPLNNSGFYHSLEGKLVQNNCLLSTVSAALYCAVDKSLLGQGFDREVLYFLKVACNCIQPIPNRRPTMVEVY KMLMAIKNTHPDILG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G48380		BIR1	BAK1-interacting receptor-like...		Potri.017G007600 [exp]	0	1
AT1G28440		HSL1	HAESA-like 1 (.1)		Potri.007G135400 [exp]	3.46	0.8260
AT4G39330		AtCAD1, ATCAD9	cinnamyl alcohol dehydrogenase...		Potri.001G372400 [exp]	5.09	0.7922
					Potri.017G143760 [exp]	6.92	0.8225
AT3G14470			NB-ARC domain-containing disea...		Potri.018G017900 [exp]	13.15	0.8289	Pt-RGA.54
					Potri.014G013800 [exp]	14.07	0.8053
AT2G45510		CYP704A2	"cytochrome P450, family 704, ...		Potri.014G072300 [exp]	19.79	0.8043
AT4G37240			unknown protein		Potri.004G149600 [exp]	21.44	0.7873
					Potri.001G077900 [exp]	21.72	0.8212
AT5G23850			Arabidopsis thaliana protein o...		Potri.015G144400 [exp]	22.04	0.7782
AT2G17480		ATMLO8, MLO8	MILDEW RESISTANCE LOCUS O 8, S...		Potri.007G064300 [exp]	22.73	0.7939	Pt-MLO8.2

Compare expression of checked genes

Potri.017G007600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.