Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G009400 [exp] 232 / 1e-72 AT5G38280 329 / 4e-103 PR5-like receptor kinase (.1) Potri.017G009100 [exp] 214 / 1e-65 AT5G38280 331 / 1e-103 PR5-like receptor kinase (.1) Potri.017G008800 [exp] 199 / 3e-60 AT5G38280 330 / 1e-103 PR5-like receptor kinase (.1) Potri.017G007900 [exp] 194 / 2e-58 AT5G38260 324 / 1e-101 Protein kinase superfamily protein (.1) Potri.017G008600 [exp] 157 / 6e-45 AT5G38260 325 / 9e-103 Protein kinase superfamily protein (.1) Potri.017G009600 [exp] 134 / 1e-36 AT4G18250 323 / 1e-98 receptor serine/threonine kinase, putative (.1) Potri.017G009500 [exp] 126 / 1e-33 AT5G38280 327 / 3e-102 PR5-like receptor kinase (.1) Potri.007G117050 [exp] 97 / 2e-23 AT5G38280 338 / 5e-106 PR5-like receptor kinase (.1) Potri.007G141125 [exp] 91 / 2e-21 AT5G38280 335 / 9e-105 PR5-like receptor kinase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027119 [exp] 48 / 2e-06 AT5G38260 210 / 3e-60 Protein kinase superfamily protein (.1) Lus10014924 [exp] 48 / 2e-06 AT1G67000 349 / 5e-112 Protein kinase superfamily protein (.1) Lus10025554 [exp] 44 / 2e-05 AT5G38260 220 / 2e-64 Protein kinase superfamily protein (.1) Lus10025492 [exp] 44 / 3e-05 AT5G38260 326 / 1e-102 Protein kinase superfamily protein (.1) Lus10008362 [exp] 44 / 4e-05 AT1G66930 250 / 7e-75 Protein kinase superfamily protein (.1) Lus10027117 [exp] 43 / 8e-05 AT1G18390 47 / 8e-06 Protein kinase superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.017G008901.1 pacid=42813604 polypeptide=Potri.017G008901.1.p locus=Potri.017G008901 ID=Potri.017G008901.1.v4.1 annot-version=v4.1 ATGGAAGGTCATTCCTATGTCATGCTGAATCCTCCAGATTATATGATGGATACCTCTTCTTGCAAAAATGGTAGTGGTACTGCATATATTTCTTCTCCCA GCTGTGTCAATATGGAAGGTCATTCCTATGTCATGGTTGATGGGGACATCATCAACGATGTACCTGACTTGTGCCGTATAAATTTGATTTACTCTGTGCC AAAAAATATGAGAAATAAGTCGTATACAGATGTCCATGATATTTTGGTATATGGGTTCGAGCTTTCATGGTTCTCTTTCTGTTGTGATTATGGCAAAGAG AACCGCTGCAACCTTGATGAAGCCACCGTGAAGAACCACTCTTGCTTTTACGATTACACATACGCATACGACAAGATATATTCGTCGCTGTTAGACCTTT TTTTAGAAGGTATCCGCTGGATATTGTGTCGAATTAATTATGGGGGTTTTTATTGTCAATACCGGATGACCACCCTTTCAGTTTTACTAAGCTTTCTCAT GTTGTTTCTCCCTACGATACTTGCTTTTATCGTGATATATCATGTGCTACTATTTCCATGTGAGCTCCCGTCTCCTAACTTTACTAATCTATAA
AA sequence Show only first row Show all	>Potri.017G008901.1 pacid=42813604 polypeptide=Potri.017G008901.1.p locus=Potri.017G008901 ID=Potri.017G008901.1.v4.1 annot-version=v4.1 MEGHSYVMLNPPDYMMDTSSCKNGSGTAYISSPSCVNMEGHSYVMVDGDIINDVPDLCRINLIYSVPKNMRNKSYTDVHDILVYGFELSWFSFCCDYGKE NRCNLDEATVKNHSCFYDYTYAYDKIYSSLLDLFLEGIRWILCRINYGGFYCQYRMTTLSVLLSFLMLFLPTILAFIVIYHVLLFPCELPSPNFTNL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
					Potri.017G008901 [exp]	0	1
AT5G38280		PR5K	PR5-like receptor kinase (.1)		Potri.017G009400 [exp]	3.00	0.8807
AT5G05460		AtENGase85A	Endo-beta-N-acetyglucosaminida...		Potri.010G184200 [exp]	4.47	0.8681
AT4G14950		KMS1	Killing Me Slowly 1, SNARE ass...		Potri.008G151300 [exp]	5.19	0.7777
AT5G38280		PR5K	PR5-like receptor kinase (.1)		Potri.004G014200 [exp]	6.63	0.8389
AT4G29990			Leucine-rich repeat transmembr...		Potri.019G094700 [exp]	10.09	0.8463
					Potri.013G032900 [exp]	10.72	0.8358
AT4G32300		SD2-5	S-domain-2 5 (.1)		Potri.004G014636 [exp]	14.38	0.8212
AT2G23450			Protein kinase superfamily pro...		Potri.007G034500 [exp]	15.55	0.8167
AT3G28890		AtRLP43	receptor like protein 43 (.1.2...		Potri.010G009750 [exp]	17.02	0.8205
AT2G17220		Kin3	kinase 3, Protein kinase super...		Potri.018G134200 [exp]	17.20	0.8272

Compare expression of checked genes

Potri.017G008901 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.