Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G38280 328 / 2e-102 PR5K PR5-like receptor kinase (.1) AT4G18250 324 / 6e-99 receptor serine/threonine kinase, putative (.1) AT5G39020 320 / 5e-98 Malectin/receptor-like protein kinase family protein (.1) AT5G38260 316 / 5e-98 Protein kinase superfamily protein (.1) AT1G70250 311 / 1e-94 receptor serine/threonine kinase, putative (.1) AT1G66910 307 / 1e-94 Protein kinase superfamily protein (.1) AT5G39030 310 / 4e-94 Protein kinase superfamily protein (.1) AT1G66920 303 / 2e-93 Protein kinase superfamily protein (.1.2) AT1G67000 309 / 4e-93 Protein kinase superfamily protein (.1) AT1G66930 301 / 3e-92 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G009400 [exp] 946 / 0 AT5G38280 329 / 4e-103 PR5-like receptor kinase (.1) Potri.017G009600 [exp] 944 / 0 AT4G18250 323 / 1e-98 receptor serine/threonine kinase, putative (.1) Potri.017G009100 [exp] 915 / 0 AT5G38280 331 / 1e-103 PR5-like receptor kinase (.1) Potri.017G008800 [exp] 887 / 0 AT5G38280 330 / 1e-103 PR5-like receptor kinase (.1) Potri.007G141125 [exp] 822 / 0 AT5G38280 335 / 9e-105 PR5-like receptor kinase (.1) Potri.007G117050 [exp] 817 / 0 AT5G38280 338 / 5e-106 PR5-like receptor kinase (.1) Potri.007G141450 [exp] 795 / 0 AT5G38280 336 / 2e-105 PR5-like receptor kinase (.1) Potri.017G007900 [exp] 615 / 0 AT5G38260 324 / 1e-101 Protein kinase superfamily protein (.1) Potri.015G018600 [exp] 601 / 0 AT1G66920 351 / 9e-113 Protein kinase superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025492 [exp] 454 / 6e-151 AT5G38260 326 / 1e-102 Protein kinase superfamily protein (.1) Lus10014924 [exp] 450 / 2e-149 AT1G67000 349 / 5e-112 Protein kinase superfamily protein (.1) Lus10022359 [exp] 423 / 7e-140 AT1G66980 322 / 3e-101 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) Lus10008335 [exp] 420 / 7e-137 AT1G70250 316 / 8e-98 receptor serine/threonine kinase, putative (.1) Lus10025545 [exp] 397 / 3e-133 AT5G39020 316 / 1e-101 Malectin/receptor-like protein kinase family protein (.1) Lus10008362 [exp] 371 / 1e-120 AT1G66930 250 / 7e-75 Protein kinase superfamily protein (.1) Lus10025553 [exp] 341 / 2e-107 AT1G70250 341 / 4e-108 receptor serine/threonine kinase, putative (.1) Lus10027085 [exp] 322 / 1e-104 AT1G66980 275 / 1e-84 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) Lus10026761 [exp] 328 / 5e-104 AT1G67000 334 / 4e-107 Protein kinase superfamily protein (.1) Lus10025547 [exp] 328 / 2e-103 AT1G66920 345 / 2e-111 Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF13947 [poplar] [flax] GUB_WAK_bind Wall-associated receptor kinase galacturonan-binding
Representative CDS sequence Show only first row Show all	>Potri.017G009500.1 pacid=42813836 polypeptide=Potri.017G009500.1.p locus=Potri.017G009500 ID=Potri.017G009500.1.v4.1 annot-version=v4.1 ATGTTCAGTAAAATATCAACGCACCTCTTTGGTGCGTATGCAGCCCTTCTTTTGCTTGTGATCCTATCCACTCACCATAGTTGCAGTGCTAGAAAGACCA ACAATTACTGCGCTCCTTCTTCTTGTGGCAATTTCCATAATATTAGCTACCCTTTTCGATTAAGTACCGATCCCGAAAGCTGTGGCAACAAAAACTATGA ACTTGCTTGTGAAAACAACGAGCGCCTAACTTTACACTTGAACATGGTAAAATATTATGTTCAGGCAATCAATTACAGTGACTTATCAATTCGACTTGTG GATGCTGCTGTTCAGAAAGATGATTGCTTCTCCCTCCCTCATCCACTTAGTTTTCGCCGGTTAGATTACTCAGTCAAAAGCTCTTTTACGTTAGTTTTCA TAAGTTGTGAAAATCCAATACTGAATCCTCCAGCTTATATAGTGGACACTTCTTCTTGCAAAAATGACAGTAGCACTGCATATAATTCTACTTCGTCTAG CAGTGTTTCTTCTCCCAGCTTCTTTAATATGGAAGGTTATTCCTATGTCATGGTTGGTGGTGTTAAAATGGCCGACATACCAGACTTGTGCCGTATAAAT TTGATTTGTTATGTGCCTGGATTTCTTCTGCCAGAAAACAAGACCAATATGTCGTATATAGATGTTCATGATATCTTGGTATATGGGTTCGAGCTTTCAT GGTTTTCGCCCTGTTGTGGTTCTGTCAGAGAGAACCGCTGCGGGTACCTTGATAAAACAGCCATGGTCTCCTACTGTGTTGGAATCGTGATAGACTGTTA TTTAAAAGGTATCGACTGGGTAATAAATCGAATTATGGCAAAATGGTTGAAAGGCACATGGTTGAATGCCAGGTATTTGAAAGGTGTCATGTCGATAATA AATCGAAGCATAGATCACAACTCGATGTCTTATCGAAACCCAGGAACGACCATCGCTTCAAATTTACTAATCATTCTCGTAAATTTGTTCTTGACGCTGC TACTTGTGTTACTTGTCCTCATCGCGGCATTGCATGCGCTATTATTCCTTTGTGGTTTTCCATGTCTCATAATCTTGCTTATCTACAAGTGGCAAAGAAG GCATTTATCCATGTATAACAATATTGAGAAATTCTTGCAAAGTCATGATAATGATCTCATGCCGATAAGGTATAATTATTCAGAGATTAAGAAGATAACA AACGGATTTAAAGACAAATTAGGACAAGGAGGTTTTGGCTCAGTTTATAAAGGAAAGCTTCGAAGTGGTCGTTTTGTAGCAGTAAAAATATTGGGCAAGT CAAAAGCCAATGGGCAAGATTTTATCAACGAAGTTGCCACTATTGGGAGAATTTACCATGTCAATGTCATGCGAATCATAGGCTTTGCTGTTGAGGGATC AAAGCGTGCTCTTATATTAGAATTCATGCCTAATGGGTCTCTTGAAAAGTACCTTTTTTCTAATCAAGGTAGCATCCCACTAAGCAATAATAAAATGTAT GAGATTTCTCTTGGGGTGGCTCGTGGAATTGAATATCTACATCAAGGTTGTGATATGCAAATTTTACATTTTGATATCAAACCTCACAATATTCTGCTGG ATGAAAAATTTATTCCAAAAATCTCAGATTTTGGACTAGCCAAATTATACCCATCAGGTAATAATAATGTGTCTCTCACAACTGTCAGAGGAACAATTGG ATACATGGCTCCTGAATTATTGTATAAAAATATTGGAGGTGTTTCTTACAAAGCTGATGTCTATAGTTTTGGGATGTTATTAATGGATATGGTAGGAAGA AGAAAGAACTTGAATGTATTGGGCAATCATTCAAGCCGGATTTACTTTCCTGCGTGGGTTTATGACAAAGTTAGTGAAGGAAAGGACATAGAAATACAAG AAGATGCCACGGAATATGAAAAGAAAATAATAAAGAAGGTGATGATTGTGGCGTTGTGGTGCATACAATTGAAGCCCGATGATCGTCCCTCAATGCATAA AGTTGTTGAGATGCTTGAATCAGACGTTGATTTCCTCCGGATACCTCCTAAACCTTTTTTAAGCCCACATCAGATCCTAGAAGATGATGATAGAGCTAAC CCTACAAGGTTATCAGATCCACTAAATAATTGTATTGACTCTTCATATAAGTTTGGTCGTTAA
AA sequence Show only first row Show all	>Potri.017G009500.1 pacid=42813836 polypeptide=Potri.017G009500.1.p locus=Potri.017G009500 ID=Potri.017G009500.1.v4.1 annot-version=v4.1 MFSKISTHLFGAYAALLLLVILSTHHSCSARKTNNYCAPSSCGNFHNISYPFRLSTDPESCGNKNYELACENNERLTLHLNMVKYYVQAINYSDLSIRLV DAAVQKDDCFSLPHPLSFRRLDYSVKSSFTLVFISCENPILNPPAYIVDTSSCKNDSSTAYNSTSSSSVSSPSFFNMEGYSYVMVGGVKMADIPDLCRIN LICYVPGFLLPENKTNMSYIDVHDILVYGFELSWFSPCCGSVRENRCGYLDKTAMVSYCVGIVIDCYLKGIDWVINRIMAKWLKGTWLNARYLKGVMSII NRSIDHNSMSYRNPGTTIASNLLIILVNLFLTLLLVLLVLIAALHALLFLCGFPCLIILLIYKWQRRHLSMYNNIEKFLQSHDNDLMPIRYNYSEIKKIT NGFKDKLGQGGFGSVYKGKLRSGRFVAVKILGKSKANGQDFINEVATIGRIYHVNVMRIIGFAVEGSKRALILEFMPNGSLEKYLFSNQGSIPLSNNKMY EISLGVARGIEYLHQGCDMQILHFDIKPHNILLDEKFIPKISDFGLAKLYPSGNNNVSLTTVRGTIGYMAPELLYKNIGGVSYKADVYSFGMLLMDMVGR RKNLNVLGNHSSRIYFPAWVYDKVSEGKDIEIQEDATEYEKKIIKKVMIVALWCIQLKPDDRPSMHKVVEMLESDVDFLRIPPKPFLSPHQILEDDDRAN PTRLSDPLNNCIDSSYKFGR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G38280		PR5K	PR5-like receptor kinase (.1)		Potri.017G009500 [exp]	0	1
AT2G23460		ATXLG1, XLG1	extra-large G-protein 1 (.1)		Potri.009G109400 [exp]	2.00	0.9198
AT1G34420			leucine-rich repeat transmembr...		Potri.013G114200 [exp]	3.16	0.9104
AT3G47780		ABCA7, ATATH6	A. THALIANA ABC2 HOMOLOG 6, AT...		Potri.012G069700 [exp]	5.47	0.9063	PtrAOH3,ATH2.3
AT5G10380		ATRING1, RING1	RING/U-box superfamily protein...		Potri.007G097500 [exp]	5.47	0.8832
AT1G80300		ATNTT1	nucleotide transporter 1 (.1)		Potri.001G175200 [exp]	6.92	0.8922	AATP1.1,PtrAATP1
AT5G08370		ATAGAL2	alpha-galactosidase 2 (.1.2)		Potri.018G152200 [exp]	7.48	0.8895
AT1G66930			Protein kinase superfamily pro...		Potri.017G117400 [exp]	7.74	0.8734
AT1G01720	NAC	ATAF1, ANAC002	Arabidopsis NAC domain contain...		Potri.002G081000 [exp]	8.48	0.8856	Pt-ATAF1.2
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Potri.001G048700 [exp]	8.94	0.8946
AT5G47220	AP2_ERF	ATERF-2, ERF2, ...	ETHYLENE RESPONSE FACTOR- 2, e...		Potri.004G051700 [exp]	11.22	0.8711

Compare expression of checked genes

Potri.017G009500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.